PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100200940031
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family HD-ZIP
Protein Properties Length: 306aa    MW: 34671.9 Da    PI: 7.058
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100200940031genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.62.1e-18114167356
                                   --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                      Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                                   k+++++ eq+++Le+ Fe  +++  e++ +LA+ lgL+ rq+ +WFqNrRa++k
  Ote100200940031|100200940031 114 KKRRLNMEQVKTLEKNFEVGNKLEPERKMQLARALGLEPRQIAIWFQNRRARWK 167
                                   456899***********************************************9 PP
2HD-ZIP_I/II128.52.7e-41113204192
                   HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLe 81 
                                   ekkrrl+ eqvk+LE++Fe  +kLeperK++lar+Lgl+prq+a+WFqnrRAR+ktkqlE+dy+ Lkr+++a+k+en++L+
  Ote100200940031|100200940031 113 EKKRRLNMEQVKTLEKNFEVGNKLEPERKMQLARALGLEPRQIAIWFQNRRARWKTKQLENDYHLLKRQFEAIKAENDSLQ 193
                                   69******************************************************************************* PP

                   HD-ZIP_I/II  82 keveeLreelk 92 
                                   +++++L++++ 
  Ote100200940031|100200940031 194 AQNHKLHAQII 204
                                   *******9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.03E-19101171IPR009057Homeodomain-like
PROSITE profilePS5007117.151109169IPR001356Homeobox domain
SMARTSM003892.0E-17112173IPR001356Homeobox domain
CDDcd000861.42E-15114170No hitNo description
PfamPF000469.8E-16114167IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.605.3E-19116176IPR009057Homeodomain-like
PRINTSPR000311.4E-5140149IPR000047Helix-turn-helix motif
PROSITE patternPS000270144167IPR017970Homeobox, conserved site
PRINTSPR000311.4E-5149165IPR000047Helix-turn-helix motif
PfamPF021833.1E-14169210IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MIRFSAIFST HTQHVSISLS KRKSELGGSA GDDKNNIFVA SLQMSCSGEM AFFHSNFMMQ  60
TPHEDDHIHP ASSTPLQEFH GAARLLRKRS SVCEQMDNEG EDESSDDGSK IGEKKRRLNM  120
EQVKTLEKNF EVGNKLEPER KMQLARALGL EPRQIAIWFQ NRRARWKTKQ LENDYHLLKR  180
QFEAIKAEND SLQAQNHKLH AQIIALKAKE ATESINLNKE TEASCSNRSE NSTEIKLDIS  240
TTRAIDSPLS NDPNRSGQFG PSNSNAVAPL CPKMKQSVKE ESLGNMFCGM DDQTGFWPWL  300
EQQNFN
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may act in the sucrose-signaling pathway. {ECO:0000269|PubMed:11292072}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011071017.11e-140homeobox-leucine zipper protein ATHB-13
SwissprotQ8LC031e-103ATB13_ARATH; Homeobox-leucine zipper protein ATHB-13
TrEMBLA0A2G9GFL11e-140A0A2G9GFL1_9LAMI; Transcription factor HEX
STRINGXP_002520111.11e-128(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8482498
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Ribone PA,Capella M,Chan RL
    Functional characterization of the homeodomain leucine zipper I transcription factor AtHB13 reveals a crucial role in Arabidopsis development.
    J. Exp. Bot., 2015. 66(19): p. 5929-43
    [PMID:26136262]
  3. Wang X, et al.
    Overexpressed BRH1, a RING finger gene, alters rosette leaf shape in Arabidopsis thaliana.
    Sci China Life Sci, 2018. 61(1): p. 79-87
    [PMID:28887625]
  4. Ebrahimian-Motlagh S, et al.
    JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13.
    Front Plant Sci, 2017. 8: p. 2118
    [PMID:29326734]