PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100200400171

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

FAR1

Protein Properties

Length: 421aa MW: 47297.7 Da PI: 5.1953

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100200400171	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	99.6	3.4e-31	80	171	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkekdgkwevtk 80 fYn+YA++vGFs+r+s+s++s+++g i++r fvC keg+r+ ++k+ +++ +r+r++tr+gCka+l vk +++gkw v+ Ote100200400171\|100200400171 80 FYNSYARRVGFSTRVSSSRRSRKDGAIIQRSFVCAKEGFRNLNEKRtkDREIKRPRTVTRVGCKASLSVKIHESGKWLVSG 160 **************************************998888545677889********************** PP FAR1 81 leleHnHelap 91 +++eHnHel+p Ote100200400171\|100200400171 161 FVKEHNHELVP 171 *******86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.2E-29	80	171	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 421 aa Download sequence Send to blast
MENGVIEFDI GVGGGDDGID IEPPNDDGEI PDGSSNDANS LGSGSGETSF SHQLYIPEGD 60 HDLEPYEGME FESEEAAKAF YNSYARRVGF STRVSSSRRS RKDGAIIQRS FVCAKEGFRN 120 LNEKRTKDRE IKRPRTVTRV GCKASLSVKI HESGKWLVSG FVKEHNHELV PPDQVHCLRS 180 HRQISGPAKT LIDTRHEKEV KADFDTMNTS PVLRTPSPME KQASEFYTKK LFTRFQEELV 240 STLTFMASKV DDDEEVTSYQ VSKYEEEHKA YHVRFNVLEM RATCSCQMHE AFKFVDEGAE 300 TVESYNVAMA ALAEASNKVA LGIRNEGKTF FAIDQMRDAS VRIGIPVNHC TAEVSGSSAQ 360 QLSEDDMDQK INELSADLER ANRKCEVYRT NLLSLLKDIE DHKQRLSIEV QNIKLSMKDG 420 L

Sequence ? help Back to Top

Protein Sequence Length: 421 aa Download sequence Send to blast

MENGVIEFDI GVGGGDDGID IEPPNDDGEI PDGSSNDANS LGSGSGETSF SHQLYIPEGD  60
HDLEPYEGME FESEEAAKAF YNSYARRVGF STRVSSSRRS RKDGAIIQRS FVCAKEGFRN  120
LNEKRTKDRE IKRPRTVTRV GCKASLSVKI HESGKWLVSG FVKEHNHELV PPDQVHCLRS  180
HRQISGPAKT LIDTRHEKEV KADFDTMNTS PVLRTPSPME KQASEFYTKK LFTRFQEELV  240
STLTFMASKV DDDEEVTSYQ VSKYEEEHKA YHVRFNVLEM RATCSCQMHE AFKFVDEGAE  300
TVESYNVAMA ALAEASNKVA LGIRNEGKTF FAIDQMRDAS VRIGIPVNHC TAEVSGSSAQ  360
QLSEDDMDQK INELSADLER ANRKCEVYRT NLLSLLKDIE DHKQRLSIEV QNIKLSMKDG  420
L

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020552571.1	1e-116	protein FAR1-RELATED SEQUENCE 5
Refseq	XP_020552572.1	1e-116	protein FAR1-RELATED SEQUENCE 5
Refseq	XP_020552573.1	1e-116	protein FAR1-RELATED SEQUENCE 5
Swissprot	Q9SZL8	3e-79	FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A200PS37	1e-118	A0A200PS37_9MAGN; FAR1 DNA binding domain
TrEMBL	A0A445LWN7	1e-118	A0A445LWN7_GLYSO; Protein FAR1-RELATED SEQUENCE 5
STRING	Migut.D02326.1.p	9e-88	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA435	22	109

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]