PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100199710051
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family CPP
Protein Properties Length: 713aa    MW: 77760.9 Da    PI: 5.5848
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100199710051genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR49.86.6e-16437475240
                           TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                                   ++k+CnCk+skClk+YCeCfaag++C e C C dC+Nk 
  Ote100199710051|100199710051 437 SCKRCNCKRSKCLKLYCECFAAGVYCVEPCACIDCFNKP 475
                                   689**********************************96 PP
2TCR51.42.1e-16523561139
                           TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 
                                   ++k+gCnCkks ClkkYCeC++ g+ Cs +C+Ce+CkN 
  Ote100199710051|100199710051 523 RHKRGCNCKKSGCLKKYCECYQGGVGCSVNCRCEGCKNA 561
                                   589***********************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011142.2E-18436477IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163437.507437563IPR005172CRC domain
PfamPF036387.3E-12439474IPR005172CRC domain
SMARTSM011147.6E-18523564IPR033467Tesmin/TSO1-like CXC domain
PfamPF036386.4E-12525561IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 713 aa     Download sequence    Send to blast
MDTPERSKNT QITASISKFE ESPVFTFLNS LSPIKPVKST HITQTINPLS FASIPSVFTS  60
PHVSSVRESR FLRRHQLSDP SKPEFSSDNV IKADTIKTNN ATKQFDEQKE SADGEAAAEQ  120
SYDCSKFVVD FDKDYECVSP NSNLKPVCGL EASSSAFVPS VHEPLQKIEV NIAVSSQIDQ  180
NKEATCCDWE HMISDTSDLL VFESPNYRDS CNNSVDHETS FCTSIKGDLQ NLQLVCAVES  240
GEHIAGNEAE NLSTQPGEEY EMDDAADSSL SIPDDKMDYE HLGIYRGMRR RCLVFEMGRK  300
HLEENSGPDS SAWLHSSDGN TPSNDLVSIN RGNESSRCLL PGIGLHLNAL ASTPKDCKIV  360
NSDSSASARL LIGPSSVVNI HPSTNGQGLL ELDGMECAAV PVEDSCPPSG YAANEEINQG  420
SPKKKRRKAE QGGEGESCKR CNCKRSKCLK LYCECFAAGV YCVEPCACID CFNKPIHEDT  480
VLATRKQIES RNPLAFAPKV IRSSDSALEI GQDDSSKTPA SARHKRGCNC KKSGCLKKYC  540
ECYQGGVGCS VNCRCEGCKN AFGRKDGIEA EAVEEELDAT EKNMPENELE QNVDSAPPAT  600
PLRGGRPFSS KKKPPRSSFP SIAASSSSFL PRQGLGKASF FPPPPKFDKP FETIKEDEIP  660
EFLQGGSPDC GGMKLSSPNR KRVSPPHNAD GLRSSRKLIL RSIPSFPSLT QNQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A5e-1844156014120Protein lin-54 homolog
5fd3_B5e-1844156014120Protein lin-54 homolog
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011090684.10.0LOW QUALITY PROTEIN: protein tesmin/TSO1-like CXC 2
TrEMBLA0A4D8Y2U90.0A0A4D8Y2U9_SALSN; Uncharacterized protein
STRINGMigut.G00370.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24672345