PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ote100199080091 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
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Family | bHLH | ||||||||
Protein Properties | Length: 91aa MW: 10261.6 Da PI: 9.335 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 22 | 3e-07 | 19 | 59 | 15 | 54 |
HHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 15 riNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 +i + ++L +llP+ +s+ +s+K s +L+++++YI++L Ote100199080091|100199080091 19 QIIDLVSKLHQLLPEiRSSRRSTKASANKVLQETCNYIRNL 59 56677799*******************************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 10.08 | 4 | 59 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 6.2E-7 | 19 | 75 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.7E-4 | 19 | 59 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.44E-7 | 20 | 78 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 91 aa Download sequence Send to blast |
MSGRRSRQSS NATRITDDQI IDLVSKLHQL LPEIRSSRRS TKASANKVLQ ETCNYIRNLH 60 KEVDDLSERL SQLLSSIDAD SPEAAIIRSL I |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Atypical and probable non DNA-binding bHLH transcription factor that integrates multiple signaling pathways to regulate cell elongation and plant development. May have a regulatory role in various aspects of gibberellin-dependent growth and development. {ECO:0000269|PubMed:16527868}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016559055.1 | 2e-46 | PREDICTED: transcription factor PRE6-like | ||||
Swissprot | Q9LJX1 | 3e-44 | PRE5_ARATH; Transcription factor PRE5 | ||||
TrEMBL | A0A2G9I4F9 | 6e-50 | A0A2G9I4F9_9LAMI; Uncharacterized protein | ||||
STRING | PGSC0003DMT400017748 | 3e-45 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA353 | 24 | 161 |