PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ote100197820041 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
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Family | MYB_related | ||||||||
Protein Properties | Length: 683aa MW: 75650.3 Da PI: 8.8299 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 24.6 | 5.8e-08 | 584 | 633 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 r ++T E e lv+av++lG+g+W+ + + k+Rt ++k++w ++ Ote100197820041|100197820041 584 RRPFTVAEVEALVQAVEKLGTGRWRDVKLRAFdnaKHRTYVDLKDKWKTL 633 679***********************9988889**************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54236 | 8.67E-8 | 384 | 476 | IPR029071 | Ubiquitin-related domain |
PROSITE profile | PS50053 | 9.134 | 390 | 460 | IPR000626 | Ubiquitin domain |
CDD | cd01769 | 0.00312 | 393 | 460 | No hit | No description |
PROSITE profile | PS51294 | 15.578 | 579 | 638 | IPR017930 | Myb domain |
SMART | SM00717 | 9.5E-8 | 583 | 636 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.9E-11 | 584 | 634 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 7.83E-16 | 585 | 666 | IPR009057 | Homeodomain-like |
CDD | cd11660 | 7.92E-18 | 585 | 635 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 683 aa Download sequence Send to blast |
MALHKRLDYG FNGYQLPPTP RAARSARKRS LFKRKADDNQ MCAFDLLATV AGKLLLDGEN 60 PPSANTSSGK EQPGNVGNYV GKEEKDELKS LKEKSCERDC YERNFLFTEI VSDAPNPNSC 120 SNELACTQND VISRPASGIT SSDCSEKIGS AEQLVNDDCK LSLGISTPSV DIEPSFFRPS 180 ANSASEEESR KDVKPDSANI SNKVSLCSSE TPERKSSALV CSVDSVKFPF CGDPTRCGSF 240 PINRENVKLV TRDDDENSSE CIEPSTRNKV FKPPGDRRFR KLLAPKLCKI TSSAKDDKGF 300 LERCNYLNRK NGFKRQRSLR DYPFKKRKLY DYGSVSNSDD SITGDGMFRV SKNGSKEDGV 360 GSVPTLPEAN MNPTSVAGAY ASFHSRNSQV KLRIKSFRVP ELFIEIPETA TIGSLKCMVM 420 EAVNTVLGGG LRVGVLLQGK KIRDDNKTLA QTGISHDNKM DTLGFTLEPS PSAPAPIRSF 480 PEDCSGQLMC NNPQPLARYP PTPSITQNGS QEGNHDIHHD HHGSFNNFME SDHDSAPSPP 540 GMSLQRTNSE SKALVPVPTV KHDVLAVVPM RKSKRSESTQ RRIRRPFTVA EVEALVQAVE 600 KLGTGRWRDV KLRAFDNAKH RTYVDLKDKW KTLVHTAGIS PQQRRGEPVP QELLDRVLTA 660 HAYWSQQQPK QQLKSHPETC LLL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2juh_A | 1e-54 | 571 | 674 | 4 | 107 | Telomere binding protein TBP1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds specifically to the plant telomeric double-stranded DNA sequences. At least 6 repeats of telomeric sequences are required for binding. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011089486.1 | 0.0 | telomere repeat-binding protein 2 | ||||
Refseq | XP_011089488.1 | 0.0 | telomere repeat-binding protein 2 | ||||
Swissprot | Q6R0E3 | 1e-127 | TRP5_ARATH; Telomere repeat-binding protein 5 | ||||
TrEMBL | A0A4D9BW66 | 0.0 | A0A4D9BW66_SALSN; Uncharacterized protein | ||||
STRING | Migut.D02080.1.p | 0.0 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3076 | 23 | 48 |