PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100197820041
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family MYB_related
Protein Properties Length: 683aa    MW: 75650.3 Da    PI: 8.8299
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100197820041genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.65.8e-08584633147
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                                   r ++T  E e lv+av++lG+g+W+ +  +     k+Rt  ++k++w ++
  Ote100197820041|100197820041 584 RRPFTVAEVEALVQAVEKLGTGRWRDVKLRAFdnaKHRTYVDLKDKWKTL 633
                                   679***********************9988889**************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF542368.67E-8384476IPR029071Ubiquitin-related domain
PROSITE profilePS500539.134390460IPR000626Ubiquitin domain
CDDcd017690.00312393460No hitNo description
PROSITE profilePS5129415.578579638IPR017930Myb domain
SMARTSM007179.5E-8583636IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.9E-11584634IPR009057Homeodomain-like
SuperFamilySSF466897.83E-16585666IPR009057Homeodomain-like
CDDcd116607.92E-18585635No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 683 aa     Download sequence    Send to blast
MALHKRLDYG FNGYQLPPTP RAARSARKRS LFKRKADDNQ MCAFDLLATV AGKLLLDGEN  60
PPSANTSSGK EQPGNVGNYV GKEEKDELKS LKEKSCERDC YERNFLFTEI VSDAPNPNSC  120
SNELACTQND VISRPASGIT SSDCSEKIGS AEQLVNDDCK LSLGISTPSV DIEPSFFRPS  180
ANSASEEESR KDVKPDSANI SNKVSLCSSE TPERKSSALV CSVDSVKFPF CGDPTRCGSF  240
PINRENVKLV TRDDDENSSE CIEPSTRNKV FKPPGDRRFR KLLAPKLCKI TSSAKDDKGF  300
LERCNYLNRK NGFKRQRSLR DYPFKKRKLY DYGSVSNSDD SITGDGMFRV SKNGSKEDGV  360
GSVPTLPEAN MNPTSVAGAY ASFHSRNSQV KLRIKSFRVP ELFIEIPETA TIGSLKCMVM  420
EAVNTVLGGG LRVGVLLQGK KIRDDNKTLA QTGISHDNKM DTLGFTLEPS PSAPAPIRSF  480
PEDCSGQLMC NNPQPLARYP PTPSITQNGS QEGNHDIHHD HHGSFNNFME SDHDSAPSPP  540
GMSLQRTNSE SKALVPVPTV KHDVLAVVPM RKSKRSESTQ RRIRRPFTVA EVEALVQAVE  600
KLGTGRWRDV KLRAFDNAKH RTYVDLKDKW KTLVHTAGIS PQQRRGEPVP QELLDRVLTA  660
HAYWSQQQPK QQLKSHPETC LLL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A1e-545716744107Telomere binding protein TBP1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds specifically to the plant telomeric double-stranded DNA sequences. At least 6 repeats of telomeric sequences are required for binding.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011089486.10.0telomere repeat-binding protein 2
RefseqXP_011089488.10.0telomere repeat-binding protein 2
SwissprotQ6R0E31e-127TRP5_ARATH; Telomere repeat-binding protein 5
TrEMBLA0A4D9BW660.0A0A4D9BW66_SALSN; Uncharacterized protein
STRINGMigut.D02080.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA30762348