PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100197820031
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family GRAS
Protein Properties Length: 790aa    MW: 88899.8 Da    PI: 5.0771
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100197820031genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS351.61.2e-1074177871373
                          GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaal 81 
                                   l++lL++cA+ v+++d + a + L+++ +++sp+gd  qRla++f+ +L+arl ++++ely++l+ ++ +    +e+l+a+
  Ote100197820031|100197820031 417 LRTLLISCAQSVAADDRRTAYEQLKQIMQHSSPTGDVYQRLAHVFASGLQARLGGTGTELYASLSRRKIT---AAEKLKAY 494
                                   6789************************************************************999998...9******* PP

                          GRAS  82 klfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeelee 160
                                   +++  ++P+ k+s   aN++I+  +++++++HiiDf+i +G+QWp L+q L++R +gpp+lRiTg++ p++g   +e+lee
  Ote100197820031|100197820031 495 QIYLTACPFKKLSIAFANKMIVSVASEASTLHIIDFGILYGFQWPILIQHLSERIGGPPKLRITGIEFPQPGfrPTERLEE 575
                                   ***********************************************************************9********* PP

                          GRAS 161 tgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvv 241
                                   tg+rLak++e+++vpfe+++++++++e++++e+L++ +gE+l Vn+ +q  rllde+v ++s+rd+vL+l+++++P+++v 
  Ote100197820031|100197820031 576 TGSRLAKYCERFHVPFEYQAIASQNWESIKIEDLKIASGEVLTVNSLFQFRRLLDETVMVDSPRDAVLNLIRKIKPDIFVN 656
                                   *********************999********************************************************* PP

                          GRAS 242 veqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleea 322
                                   +    + +++ F++rf eal +ysalfd+++a+l re+ +ri  E+ + gre+ nvvacegaer+er et+++W+ r  +a
  Ote100197820031|100197820031 657 AVTSGSFSAPFFVTRFREALFHYSALFDMFDATLTRENPHRIDFEQDFYGREVINVVACEGAERVERPETYKQWQVRHIRA 737
                                   ********************************************************************************* PP

                          GRAS 323 GFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                                   GFkp+pl++ + +++++  + +++d +  +e+  ++++gWk+r + + S+W
  Ote100197820031|100197820031 738 GFKPLPLDHVILNKIRRKCSGYHKD-FLFDEDGCWMLQGWKGRIICASSCW 787
                                   ***********************77.************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098563.733391769IPR005202Transcription factor GRAS
PfamPF035144.1E-105417787IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009410Biological Processresponse to xenobiotic stimulus
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
Sequence ? help Back to Top
Protein Sequence    Length: 790 aa     Download sequence    Send to blast
DCLSLHINPS PTNRQRCILF RPSLLISLDR HTLLTAYSSL SHHSINFKMT NTANEFKFDE  60
DSFFSSNEQS QNRKNGNMHD YLELDALDIP LSSMSPGPDN FGPSSKLSYE VESPDDPDSD  120
PVLKFLNQIL VEEDMEEKPS MFHDPLALHA AEKSLYDVIG QKYPPSPSYP GIYGDPKSDS  180
PDSYFGSSSE YTSSSNAGSS SIDPHCIVDP GENNSAVEQG HLQDLSSNSF LTVSSQSPFD  240
AVNSSYGNGN TQVNSFGDTS MLQNLFTDSE SVLQFKKGME EASKFLPTNN QLIIDLDKYE  300
LPQKSEDIST AVVIKAEKDE AHDFPTVLKG RKHQYPDDGD LEDMERSSKQ FATNVEEVEL  360
SEMFDRVLLC TDIKGECGNN DPQLPSPASM PELPPNGSDS RRARTKKNER LEDSVDLRTL  420
LISCAQSVAA DDRRTAYEQL KQIMQHSSPT GDVYQRLAHV FASGLQARLG GTGTELYASL  480
SRRKITAAEK LKAYQIYLTA CPFKKLSIAF ANKMIVSVAS EASTLHIIDF GILYGFQWPI  540
LIQHLSERIG GPPKLRITGI EFPQPGFRPT ERLEETGSRL AKYCERFHVP FEYQAIASQN  600
WESIKIEDLK IASGEVLTVN SLFQFRRLLD ETVMVDSPRD AVLNLIRKIK PDIFVNAVTS  660
GSFSAPFFVT RFREALFHYS ALFDMFDATL TRENPHRIDF EQDFYGREVI NVVACEGAER  720
VERPETYKQW QVRHIRAGFK PLPLDHVILN KIRRKCSGYH KDFLFDEDGC WMLQGWKGRI  780
ICASSCWVPA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A8e-424217878374GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011089502.10.0scarecrow-like protein 14
RefseqXP_020552354.10.0scarecrow-like protein 14
RefseqXP_020552355.10.0scarecrow-like protein 14
SwissprotQ9XE580.0SCL14_ARATH; Scarecrow-like protein 14
TrEMBLA0A291I3020.0A0A291I302_SALMI; GRAS3 transcription factor
STRINGMigut.D02079.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA27624191
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]