PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ote100197490041 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
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Family | MYB_related | ||||||||
Protein Properties | Length: 205aa MW: 23964.1 Da PI: 7.6634 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 57.4 | 3.3e-18 | 16 | 63 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd ll ++vk++G g+W+ ++r g++R +k+c++rw +yl Ote100197490041|100197490041 16 KGPWTAEEDRLLTEYVKLHGEGRWNNVSRLAGLKRNGKSCRLRWVNYL 63 79********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.4E-22 | 11 | 66 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 23.98 | 11 | 67 | IPR017930 | Myb domain |
SMART | SM00717 | 3.5E-16 | 15 | 65 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.4E-16 | 16 | 63 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 8.98E-23 | 17 | 90 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.01E-11 | 18 | 63 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.1E-7 | 67 | 89 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 205 aa Download sequence Send to blast |
MSQDMGWGAV NEGWRKGPWT AEEDRLLTEY VKLHGEGRWN NVSRLAGLKR NGKSCRLRWV 60 NYLRPDLKRG QITPHEERII LELHARWGNS AEKTRARLLR KQQFQLXXXX XXXREQDQMD 120 MRKIIASLVD ENENGVPNFS QLRQEMVYPS ASSDENSMIG NYATAPEAWT EEIVWDGLWN 180 WGDLHGNYIT AKPNYNQNFA SSTFY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 5e-14 | 16 | 89 | 27 | 99 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022849439.1 | 6e-75 | transcription factor WER-like | ||||
Refseq | XP_022849440.1 | 6e-75 | transcription factor WER-like | ||||
TrEMBL | A0A2G9FY60 | 1e-75 | A0A2G9FY60_9LAMI; Transcription factor, Myb superfamily | ||||
STRING | cassava4.1_013947m | 3e-64 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |