PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100196640011
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family ARR-B
Protein Properties Length: 601aa    MW: 66613.8 Da    PI: 6.4147
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100196640011genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like91.76.1e-29161214155
                       G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                                   kpr++W+ eLH++Fv av+qL G++kA+Pk+ilelm+v+gLt+e+v+SHLQkYRl
  Ote100196640011|100196640011 161 KPRVVWSVELHQQFVTAVNQL-GIDKAVPKKILELMNVPGLTRENVASHLQKYRL 214
                                   79*******************.********************************8 PP
2Response_reg38.75.4e-1478923109
                                   CEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTESEEEESS CS
                  Response_reg  23 yeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGakdflsKp 101
                                   y ev+ ++ +e al+ll+e++  +D+++ D+ mp+mdG++ll++   e  +lp+i    +++++ + + +  Ga d+l Kp
  Ote100196640011|100196640011   7 Y-EVTKCSRAEIALKLLRENRdgFDVVISDVHMPDMDGFKLLEHVGLEM-DLPVI----NDSKQVVMKGVTHGACDYLIKP 81 
                                   6.8999***********99999***********************6644.8**99....566899**************** PP

                                   --HHHHHH CS
                  Response_reg 102 fdpeelvk 109
                                   + +e+l +
  Ote100196640011|100196640011  82 VRMEALKN 89 
                                   ***99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011024.956195IPR001789Signal transduction response regulator, receiver domain
Gene3DG3DSA:3.40.50.23001.1E-251109No hitNo description
SuperFamilySSF521721.99E-201102IPR011006CheY-like superfamily
CDDcd001565.07E-17194No hitNo description
SMARTSM004480.0068191IPR001789Signal transduction response regulator, receiver domain
PIRSFPIRSF0363927.9E-1441593IPR017053Response regulator B-type, plant
PfamPF000723.0E-11789IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5129410.611158217IPR017930Myb domain
SuperFamilySSF466892.69E-20158218IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.6E-30160219IPR009057Homeodomain-like
TIGRFAMsTIGR015577.2E-25161214IPR006447Myb domain, plants
PfamPF002499.1E-8163213IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 601 aa     Download sequence    Send to blast
MLRNCLYEVT KCSRAEIALK LLRENRDGFD VVISDVHMPD MDGFKLLEHV GLEMDLPVIN  60
DSKQVVMKGV THGACDYLIK PVRMEALKNI WQHVVRKKKH EWKEKDLEQS GSVEDGERQQ  120
KPCDDADYSS SANXXXXXXX XXXXXXXXXA EDKDDTSTLK KPRVVWSVEL HQQFVTAVNQ  180
LGIDKAVPKK ILELMNVPGL TRENVASHLQ KYRLYLRRLS GQSQNGMGNS FMGPADSTFG  240
PLSSLNGLQA LASSGQISPQ SLATIQAAAF SRATNKSLVD QQNIFSFENP NIRFLDAHQQ  300
HNNSKQVNLL HGIPTNMDSK QLAALHPSAQ PFGNVHSQSS QSNSQLTQLV QPHSRTQMLN  360
EVGSSSSKVL NLQSSVGQPG LSRVIPGAVL NRYGIEHVRA PTYSTLSHPS SVIEFSRRQG  420
IDIPENTIPL AGISGTSNFI SKGMLQEELN SELKGSRSFL PDFDAFNQNR SEDWGLQNVR  480
STFETPQQGG LEVGPSVLVQ SGFGSDQRSG HIPTTTTTVS KSVSGLESNM NLGQQLASSY  540
VDNSLRIKTE RLPEIGFQNR LFTDQFGQED LMSALLKQQE GVLPVENEFG FDEYQLDNLP  600
V
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A3e-21160220464ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins. Involved in the expression of nuclear genes for components of mitochondrial complex I. Promotes cytokinin-mediated leaf longevity. Involved in the ethylene signaling pathway in an ETR1-dependent manner and in the cytokinin signaling pathway. {ECO:0000269|PubMed:11370868, ECO:0000269|PubMed:11574878, ECO:0000269|PubMed:15282545, ECO:0000269|PubMed:16407152}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011071400.10.0two-component response regulator ARR2 isoform X2
SwissprotQ9ZWJ91e-152ARR2_ARATH; Two-component response regulator ARR2
TrEMBLA0A4D9A8J20.0A0A4D9A8J2_SALSN; Two-component response regulator ARR-B family
STRINGEOY066390.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31912450
Publications ? help Back to Top
  1. Takahashi N, et al.
    Cytokinins control endocycle onset by promoting the expression of an APC/C activator in Arabidopsis roots.
    Curr. Biol., 2013. 23(18): p. 1812-7
    [PMID:24035544]
  2. Ge XM, et al.
    Heterotrimeric G protein mediates ethylene-induced stomatal closure via hydrogen peroxide synthesis in Arabidopsis.
    Plant J., 2015. 82(1): p. 138-50
    [PMID:25704455]
  3. Takahashi N,Umeda M
    Cytokinins promote onset of endoreplication by controlling cell cycle machinery.
    Plant Signal Behav, 2014. 9(8): p. e29396
    [PMID:25763620]
  4. Kobayashi K, et al.
    Shoot Removal Induces Chloroplast Development in Roots via Cytokinin Signaling.
    Plant Physiol., 2017. 173(4): p. 2340-2355
    [PMID:28193764]
  5. Arnaud D, et al.
    Cytokinin-Mediated Regulation of Reactive Oxygen Species Homeostasis Modulates Stomatal Immunity in Arabidopsis.
    Plant Cell, 2017. 29(3): p. 543-559
    [PMID:28254779]
  6. Zhang TQ, et al.
    A Two-Step Model for de Novo Activation of WUSCHEL during Plant Shoot Regeneration.
    Plant Cell, 2017. 29(5): p. 1073-1087
    [PMID:28389585]
  7. Meng WJ, et al.
    Type-B ARABIDOPSIS RESPONSE REGULATORs Specify the Shoot Stem Cell Niche by Dual Regulation of WUSCHEL.
    Plant Cell, 2017. 29(6): p. 1357-1372
    [PMID:28576846]
  8. Zhang F,May A,Irish VF
    Type-B ARABIDOPSIS RESPONSE REGULATORs Directly Activate WUSCHEL.
    Trends Plant Sci., 2017. 22(10): p. 815-817
    [PMID:28886911]
  9. Takatsuka H,Higaki T,Umeda M
    Actin Reorganization Triggers Rapid Cell Elongation in Roots.
    Plant Physiol., 2018. 178(3): p. 1130-1141
    [PMID:30185441]