PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100196600001

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

ERF

Protein Properties

Length: 89aa MW: 10011.9 Da PI: 12.0228

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100196600001	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	61.9	1.4e-19	43	89	3	53
AP2 3 ykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkl 53 ++GVr ++ +gr++AeIrd ++ ++r++lg+f++ae+Aa+a++aa+++l Ote100196600001\|100196600001 43 FRGVRKRP-WGRYAAEIRDpWK----KTRVWLGTFDSAEDAARAYDAAARSL 89 8*****.******883....5********************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00847	2.5E-12	42	88	IPR001471	AP2/ERF domain
CDD	cd00018	1.14E-12	42	74	No hit	No description
PROSITE profile	PS51032	20.679	42	89	IPR001471	AP2/ERF domain
SMART	SM00380	1.4E-18	42	89	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	4.9E-18	43	88	IPR016177	DNA-binding domain
PRINTS	PR00367	6.9E-11	43	54	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	4.3E-25	43	89	IPR001471	AP2/ERF domain
PRINTS	PR00367	6.9E-11	65	81	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 89 aa Download sequence Send to blast
MRRGRAAARP AAAAVPGAXX XXXXXXXXXX XXXXXXGSKE IRFRGVRKRP WGRYAAEIRD 60 PWKKTRVWLG TFDSAEDAAR AYDAAARSL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	4e-17	37	89	9	62	Ethylene-responsive transcription factor ERF096
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Functional Description ? help Back to Top
Source	Description
UniProt	Acts as a transcriptional repressor. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways and could also regulate other AtERFs. {ECO:0000269\|PubMed:10715325, ECO:0000269\|PubMed:11487705, ECO:0000269\|PubMed:9756931}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by jasmonate (JA), ethylene and Alternaria brassicicola (locally and systemically). Moderate induction by wounding or drought stress does not require EIN2, whereas induction by NaCl does. Transcripts accumulate slightly in cycloheximide-treated plants, a protein synthesis inhibitor. Seems to not be influenced by ethylene, exogenous abscisic acid (ABA), cold and heat stress. {ECO:0000269\|PubMed:10715325, ECO:0000269\|PubMed:12805630}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011095450.1	2e-28	ethylene-responsive transcription factor 3-like
Swissprot	O80339	7e-26	ERF82_ARATH; Ethylene-responsive transcription factor 3
TrEMBL	A0A2G9I2B8	2e-29	A0A2G9I2B8_9LAMI; Uncharacterized protein
STRING	PGSC0003DMT400057443	2e-27	(Solanum tuberosum)
STRING	Migut.M01719.1.p	2e-27	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3330	23	47

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]