PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100195360131
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family B3
Protein Properties Length: 551aa    MW: 61834.4 Da    PI: 7.4551
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100195360131genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B359.75.1e-19213303199
                                   EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEE CS
                            B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvv 81 
                                   f+k +++s+v +  +l lp +f+e+h    +++++++le+e+g+++e  +i ++++    l++GW+ F+ +++L++gD +v
  Ote100195360131|100195360131 213 FVKSMVRSHVYSCFWLGLPTRFCEDHLP--KSTVDMVLENEEGEEYEAVYISKRTG----LSGGWRAFALDHKLDDGDALV 287
                                   89************************53..3789****************544444....********************* PP

                                   EEE-SSSEE..EEEEE-S CS
                            B3  82 Fkldgrsefelvvkvfrk 99 
                                   F+l++ ++f  +v+++r+
  Ote100195360131|100195360131 288 FELIEPTRF--KVHIVRA 303
                                   ***987777..9999886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF108903.8E-25158IPR020101Cytochrome b-c1 complex subunit 8, plants
ProDomPD0562404.0E-14243IPR020101Cytochrome b-c1 complex subunit 8, plants
Gene3DG3DSA:2.40.330.103.6E-23205306IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.32E-25208308IPR015300DNA-binding pseudobarrel domain
CDDcd100174.55E-21211302No hitNo description
SMARTSM010192.6E-26213304IPR003340B3 DNA binding domain
PROSITE profilePS5086313.408213304IPR003340B3 DNA binding domain
PfamPF023622.7E-17213303IPR003340B3 DNA binding domain
PfamPF108901.4E-31480551IPR020101Cytochrome b-c1 complex subunit 8, plants
Gene3DG3DSA:1.20.5.2107.1E-4481545IPR004205Cytochrome b-c1 complex subunit 8
ProDomPD0562404.0E-27481551IPR020101Cytochrome b-c1 complex subunit 8, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0022900Biological Processelectron transport chain
GO:0005743Cellular Componentmitochondrial inner membrane
GO:0070469Cellular Componentrespiratory chain
GO:0003677Molecular FunctionDNA binding
GO:0008121Molecular Functionubiquinol-cytochrome-c reductase activity
Sequence ? help Back to Top
Protein Sequence    Length: 551 aa     Download sequence    Send to blast
MGKIPVRMKS VTYALSPFQQ KVMPGLWKDL PEKISHKISE NWISTTLLLG PLLGTYSSTH  60
TLHLSELAYG DVVVYDGVFM VAECQDSSSP FKEEIISFNL LQDLGIMKLT KGLSDLTKSE  120
KPQNRQVRMK AVSSYSMEPR RSSRARNPVQ SYRDDVAVEL PTLRKRSNSG SSWASYLARP  180
VEEVKVASYE ERAQAFKCAE KLQSNLQTEN PSFVKSMVRS HVYSCFWLGL PTRFCEDHLP  240
KSTVDMVLEN EEGEEYEAVY ISKRTGLSGG WRAFALDHKL DDGDALVFEL IEPTRFKVHI  300
VRASECESGN DSVVASNADE TAKKNTNKRK TSNNAGTKTD SSTEVAGTTE SGSSLDFLLY  360
FDGYLTQMQQ LETLFLVDDW PMSFLSMRAV AILASHREKN LPNGDTSTDT LGLAKGTSHT  420
CLEPIGTSTR QHFVYAKHVK GVNPDPQVES VFSGKLGHFH PAIKSLTLIE SELRIAEFEM  480
GKIPVKMKSV TYALSPFQQK IMPGLWKGLP EKISHKISEN WISATLLLGP LVGTHSYVQW  540
YQEKEKMEHR Y
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2J6KRG61e-126A0A2J6KRG6_LACSA; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA125102022