PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100194770151
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family NAC
Protein Properties Length: 393aa    MW: 44334.3 Da    PI: 7.8822
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100194770151genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM170.94e-53191471128
                           NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksg 81 
                                   + pGfrFhPtdeelv +yLk+k+++++l++ e ik+vdiyk++PwdLpk ++++ekewyf+++rd+ky++++r+nr+t sg
  Ote100194770151|100194770151  19 MLPGFRFHPTDEELVEFYLKRKLQHRPLPI-ELIKQVDIYKYDPWDLPKVASTGEKEWYFYCPRDRKYRNSTRPNRVTGSG 98 
                                   579***************************.89***************9888999************************** PP

                           NAM  82 yWkatgkdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                                   +Wkatg+d++++s+  +g+ +glkk+Lvfy+gra kg ktdW+mhe+rl
  Ote100194770151|100194770151  99 FWKATGTDRPIYSSdnGGKCIGLKKSLVFYRGRAAKGIKTDWMMHEFRL 147
                                   *************9878888***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019419.15E-6018184IPR003441NAC domain
PROSITE profilePS5100557.69419184IPR003441NAC domain
PfamPF023651.7E-2521147IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 393 aa     Download sequence    Send to blast
MMERMDDKNE TDKSGEELML PGFRFHPTDE ELVEFYLKRK LQHRPLPIEL IKQVDIYKYD  60
PWDLPKVAST GEKEWYFYCP RDRKYRNSTR PNRVTGSGFW KATGTDRPIY SSDNGGKCIG  120
LKKSLVFYRG RAAKGIKTDW MMHEFRLPST TDGGALPHPP PPKKIFHKTF PPSDSWAICR  180
IFKKVNSTAN RAISHNWTSS LSATTSSDAF TYTHFITSDN DFSALNIPSY AKPTTIGKAS  240
TLTSANEDCC FFPGNLVFSE ASNTSNKTSV DLTSPVFFNQ STALHGKNSD SLGFDPAQHH  300
CNGNYSVXXX XXXXXXXXXX EGNINGDDEQ EGVRKNTGAM NVQHVWENIR SIGFPFSLPA  360
AGEESWKGNM PWDSPPYPSE MSSTTYSTNK SYI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-5451871171Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPromotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269|PubMed:19081078}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269|PubMed:19081078}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011098618.11e-166putative NAC domain-containing protein 94
SwissprotQ9ZVH01e-98FEZ_ARATH; Protein FEZ
TrEMBLA0A2G9I4111e-165A0A2G9I411_9LAMI; Uncharacterized protein
STRINGMigut.H00918.1.p1e-150(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA22022262
Publications ? help Back to Top
  1. Bennett T,van den Toorn A,Willemsen V,Scheres B
    Precise control of plant stem cell activity through parallel regulatory inputs.
    Development, 2014. 141(21): p. 4055-64
    [PMID:25256342]