PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ote100194070001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
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Family | LBD | ||||||||
Protein Properties | Length: 167aa MW: 18961.6 Da PI: 6.2949 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 128.6 | 2.9e-40 | 11 | 109 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvil 81 +CaaCk+l+r+C+++C +apyf +++pkkfa vhk+FGasnv+k+l+++ ee+red+++slv+eAe+r++dPvyG++g i Ote100194070001|100194070001 11 SCAACKFLKRRCTPNCQFAPYFRSDEPKKFAKVHKVFGASNVSKILNEVAEEQREDTVNSLVFEAEVRLQDPVYGCIGAIA 91 6******************************************************************************** PP DUF260 82 klqqqleqlkaelallke 99 +lq+++ +l+++l l+++ Ote100194070001|100194070001 92 SLQHKMVELQHDLILARA 109 ***********9988876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 25.019 | 10 | 111 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.5E-39 | 11 | 107 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 167 aa Download sequence Send to blast |
MKSQEPRSTS SCAACKFLKR RCTPNCQFAP YFRSDEPKKF AKVHKVFGAS NVSKILNEVA 60 EEQREDTVNS LVFEAEVRLQ DPVYGCIGAI ASLQHKMVEL QHDLILARAR LACYVEQHQQ 120 SAFFDDHHNH LNMAPLLDIP EPSAAAMVDI FDHDNLPLDQ FSPFQFP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 7e-42 | 6 | 114 | 6 | 114 | LOB family transfactor Ramosa2.1 |
5ly0_B | 7e-42 | 6 | 114 | 6 | 114 | LOB family transfactor Ramosa2.1 |
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Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011076828.2 | 2e-97 | LOB domain-containing protein 21-like | ||||
Swissprot | Q9SRL8 | 1e-60 | LBD21_ARATH; LOB domain-containing protein 21 | ||||
TrEMBL | A0A4D8Z4V0 | 3e-84 | A0A4D8Z4V0_SALSN; Uncharacterized protein | ||||
STRING | XP_009630762.1 | 5e-71 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA43 | 24 | 669 |
Publications ? help Back to Top | |||
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