PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100193930061
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family M-type_MADS
Protein Properties Length: 312aa    MW: 35705.2 Da    PI: 10.4237
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100193930061genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF68.56.3e-22117164249
                                   ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
                        SRF-TF   2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 
                                    i ++  r+vtfskRr+g++KKA ELSvLC++++a+iifs  g+ y +
  Ote100193930061|100193930061 117 LIADENARTVTFSKRRAGLFKKATELSVLCGTQIALIIFSLGGRAYSF 164
                                   5889999*********************************99999887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.0E-30108167IPR002100Transcription factor, MADS-box
PROSITE profilePS5006625.623108168IPR002100Transcription factor, MADS-box
CDDcd002651.89E-31109178No hitNo description
SuperFamilySSF554554.45E-26109182IPR002100Transcription factor, MADS-box
PRINTSPR004041.8E-18110130IPR002100Transcription factor, MADS-box
PfamPF003193.9E-22118164IPR002100Transcription factor, MADS-box
PRINTSPR004041.8E-18130145IPR002100Transcription factor, MADS-box
PRINTSPR004041.8E-18145166IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009960Biological Processendosperm development
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MRQNRSINSR FPSRRIDNPA KCNTFWKLKV DIVYFYPRAY KFHAVSVDLD KDNNGGNPDL  60
PNVKILEEKI CRVIFLHPIR KPLLLFILFS ITYLHMAMAP PQVKKKSQGR RKIEMKLIAD  120
ENARTVTFSK RRAGLFKKAT ELSVLCGTQI ALIIFSLGGR AYSFGHPDVE SIIGRFFNRY  180
LAPTPPESVH AMRVRAGTLR DVKGQLDQKS AELENKKRRG KEIEEALENS SYQISEERLD  240
GLNLYQLHQL KEKMETLREQ MHRLINAPRS NAVQPPNPTN AAEPSNSGQL DLADVGRKER  300
EASPIPSDWL KL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mnm_A3e-141101731881PROTEIN (MCM1 TRANSCRIPTIONAL REGULATOR)
1mnm_B3e-141101731881PROTEIN (MCM1 TRANSCRIPTIONAL REGULATOR)
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012827635.12e-72PREDICTED: uncharacterized protein LOC105948920
TrEMBLA0A4D8YFR62e-84A0A4D8YFR6_SALSN; MADS-box transcription factor, plant
TrEMBLA0A4D8YQF03e-84A0A4D8YQF0_SALSN; MADS-box transcription factor, plant
STRINGMigut.I00404.1.p3e-74(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1565666