PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100193880041
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family NAC
Protein Properties Length: 269aa    MW: 30657 Da    PI: 9.646
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100193880041genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM118.47.1e-37141201128
                           NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksg 81 
                                   lppGfrFhPtdeel+v+yLk+kv +++l++ ++i+evd                  e yfF++++ ky++g+r+nrat+sg
  Ote100193880041|100193880041  14 LPPGFRFHPTDEELLVQYLKRKVLSHPLPA-SIIPEVD------------------ERYFFTTKEVKYPNGNRSNRATRSG 75 
                                   79*************************999.6676654..................68*********************** PP

                           NAM  82 yWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                                   yWkatg dk++ +  ++  g+kktLvfy+g+ pkg++tdW+mheyrl
  Ote100193880041|100193880041  76 YWKATGLDKKIGN--QQILGMKKTLVFYRGKPPKGSRTDWIMHEYRL 120
                                   ***********98..889***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.79E-4510129IPR003441NAC domain
PROSITE profilePS5100535.71114173IPR003441NAC domain
PfamPF023656.1E-2715120IPR003441NAC domain
SuperFamilySSF1019413.79E-45161173IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0010089Biological Processxylem development
GO:0010150Biological Processleaf senescence
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MEKLNLIKNG ALRLPPGFRF HPTDEELLVQ YLKRKVLSHP LPASIIPEVD ERYFFTTKEV  60
KYPNGNRSNR ATRSGYWKAT GLDKKIGNQQ ILGMKKTLVF YRGKPPKGSR TDWIMHEYRL  120
LAAAGDLPQV XXXXXXXXXX XXXXXXXXXX XXXXXXXXMC LQENWVLCRI FLKRRGNKGA  180
DEVLNKGGAA AVVPRVFYDF MGKERDDVKV VAENSWSGSS GITQISGRSE ESDDHEESSX  240
XXXXXXXQGS SESKCIECSS LDFRGRPTY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-381212013140Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that negatively regulates the expression of genes involved in xylem vessel formation. Represses the transcriptional activation activity of NAC030/VND7, which regulates protoxylem vessel differentiation by promoting immature xylem vessel-specific genes expression (PubMed:20388856). Transcriptional activator that regulates the COLD-REGULATED (COR15A and COR15B) and RESPONSIVE TO DEHYDRATION (LTI78/RD29A and LTI65/RD29B) genes by binding directly to their promoters. Mediates signaling crosstalk between salt stress response and leaf aging process (PubMed:21673078). May play a role in DNA replication of mungbean yellow mosaic virus (PubMed:24442717). {ECO:0000269|PubMed:20388856, ECO:0000269|PubMed:21673078, ECO:0000269|PubMed:24442717}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00507DAPTransfer from AT5G13180Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and salt stress. {ECO:0000269|PubMed:21673078}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011086848.13e-94NAC domain-containing protein 83
SwissprotQ9FY933e-67NAC83_ARATH; NAC domain-containing protein 83
TrEMBLA0A2G9H1C12e-93A0A2G9H1C1_9LAMI; Uncharacterized protein
STRINGcassava4.1_014492m1e-85(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13872377
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]