PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ote100193520041 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
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Family | SRS | ||||||||
Protein Properties | Length: 209aa MW: 22581.1 Da PI: 8.0742 | ||||||||
Description | SRS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF702 | 164.4 | 6.5e-51 | 15 | 150 | 3 | 152 |
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkq 83 s +++C+dCGnqakkdC h+RCRtCCksrg++C thvkstWvp+a+rr r+++ + ++ + + +++ Ote100193520041|100193520041 15 SSSSRCHDCGNQAKKDCGHSRCRTCCKSRGLHCPTHVKSTWVPVAQRRPRHHNVMLQ-PQHHH--Q-----------ISAV 81 56789********************************************95544332.22212..1...........1222 PP DUF702 84 salsstklssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGl 152 + ++ ++++ le +lP ev +a+frcvrvss+d+ +e+aYqt+vsigGhvf GiLydqG+ Ote100193520041|100193520041 82 HGPNPKRCRENQPALGLEEGDLPGEVCFPAIFRCVRVSSMDNVVDEYAYQTSVSIGGHVFTGILYDQGA 150 333333444556677888899***********************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05142 | 9.9E-54 | 17 | 150 | IPR007818 | Protein of unknown function DUF702 |
TIGRFAMs | TIGR01623 | 1.3E-25 | 20 | 61 | IPR006510 | Zinc finger, lateral root primordium type 1 |
TIGRFAMs | TIGR01624 | 2.3E-22 | 103 | 149 | IPR006511 | Lateral Root Primordium type 1, C-terminal |
Sequence ? help Back to Top |
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Protein Sequence Length: 209 aa Download sequence Send to blast |
MRREEIGGIN SSSSSSSSRC HDCGNQAKKD CGHSRCRTCC KSRGLHCPTH VKSTWVPVAQ 60 RRPRHHNVML QPQHHHQISA VHGPNPKRCR ENQPALGLEE GDLPGEVCFP AIFRCVRVSS 120 MDNVVDEYAY QTSVSIGGHV FTGILYDQGA VESEGTGNYL TGGSSSGGIG FLQQPNFLNS 180 TSATATGTTP SPYPSSFCAF TTTTSSQFF |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Suppressor of the gibberellin (GA) signal transduction. {ECO:0000269|PubMed:10368174, ECO:0000269|PubMed:11706176, ECO:0000269|PubMed:16740146}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011092834.1 | 6e-74 | protein SHI RELATED SEQUENCE 3-like | ||||
Swissprot | Q9XGX0 | 3e-49 | SHI_ARATH; Protein SHORT INTERNODES | ||||
TrEMBL | A0A4D8YQ67 | 1e-117 | A0A4D8YQ67_SALSN; Uncharacterized protein | ||||
STRING | XP_009785993.1 | 5e-67 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4156 | 24 | 45 |
Publications ? help Back to Top | |||
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