PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100193460031
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family bHLH
Protein Properties Length: 441aa    MW: 48928.6 Da    PI: 5.1694
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100193460031genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.26.2e-13357403455
                                   HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                           HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                                   +h e+Er+RR+++N++f  Lr ++P+ +      K++Ka+ L  A+ YI +Lq
  Ote100193460031|100193460031 357 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAIAYITDLQ 403
                                   799***********************66......*****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142152.9E-4449228IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.806353402IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.5E-18356417IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.34E-14356407No hitNo description
Gene3DG3DSA:4.10.280.101.3E-17357416IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.1E-10357403IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-15359408IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 441 aa     Download sequence    Send to blast
MGKNLWLNEE EKVVVESVLG SEATEYFDWS ASNNVLSEFS ASSSDLRVQE ALCKIVEASD  60
WTYAIYWHVS KSKSGRSALI WGDGHCQESK EGEDESCVGS KDGKRMEGDR RKWVLQKLHA  120
CFGGLEDDNV AAKLDQVSNV EMFYLTSMFF AFPFDKPSIP SQSFNSDRSI WVSNMDSSLE  180
RYQSRAYLAK LAQFETVVFV PTKSGVIEMG STKSIPENKS IIKSAKSVVV AFNSTQAKAV  240
PKIFGKELSL GGSRSGTINI SFSPKMEDDS GFSSESYDLQ AISSNHGYAN SSNGHRSDDG  300
EAKLFPHVNS ASVGEMDSQS IISGMELGKE DCFFLSDDQR PRKRGRKPAN GREEPLNHVE  360
AERQRREKLN QRFYALRAVV PNISKMDKAS LLGDAIAYIT DLQAKIRVLE AENKGQQNTS  420
PDFEFDESVE DAVVRLAACH A
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A4e-29351426277Transcription factor MYC2
5gnj_B4e-29351426277Transcription factor MYC2
5gnj_E4e-29351426277Transcription factor MYC2
5gnj_F4e-29351426277Transcription factor MYC2
5gnj_G4e-29351426277Transcription factor MYC2
5gnj_I4e-29351426277Transcription factor MYC2
5gnj_M4e-29351426277Transcription factor MYC2
5gnj_N4e-29351426277Transcription factor MYC2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that negatively regulates jasmonate (JA) signaling (PubMed:30610166). Negatively regulates JA-dependent response to wounding, JA-induced expression of defense genes, JA-dependent responses against herbivorous insects, and JA-dependent resistance against Botrytis cinerea infection (PubMed:30610166). Plays a positive role in resistance against the bacterial pathogen Pseudomonas syringae pv tomato DC3000 (PubMed:30610166). {ECO:0000269|PubMed:30610166}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding, feeding with herbivorous insects, infection with the fungal pathogen Botrytis cinerea and infection with the bacterial pathogen Pseudomonas syringae pv tomato DC3000. {ECO:0000269|PubMed:30610166}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011080018.10.0transcription factor bHLH3-like
RefseqXP_011080019.10.0transcription factor bHLH3-like
SwissprotA0A3Q7H2160.0MTB3_SOLLC; Transcription factor MTB3
TrEMBLA0A4D9BDF90.0A0A4D9BDF9_SALSN; Transcription factor MYC2
STRINGMigut.D00401.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA66692433
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Sun H,Fan HJ,Ling HQ
    Genome-wide identification and characterization of the bHLH gene family in tomato.
    BMC Genomics, 2015. 16: p. 9
    [PMID:25612924]
  3. Liu Y, et al.
    MYC2 Regulates the Termination of Jasmonate Signaling via an Autoregulatory Negative Feedback Loop.
    Plant Cell, 2019. 31(1): p. 106-127
    [PMID:30610166]