PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100192690001
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family bHLH
Protein Properties Length: 314aa    MW: 35032.4 Da    PI: 8.2098
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100192690001genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.45.5e-13136183355
                                   HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                           HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                   + h  +Er+RR+++ ++f  L +l+P +     kK++Ka++L  A++Y+k+Lq
  Ote100192690001|100192690001 136 QDHILAERKRREKLSQRFIALSTLIPGL-----KKMDKASVLGDAIKYMKQLQ 183
                                   57999***********************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.031133182IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.1E-11136183IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.8E-18137196IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.49E-17138202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.34E-13138187No hitNo description
SMARTSM003532.3E-15139188IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5167110.83244314IPR002912ACT domain
CDDcd048730.00142244312No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MEISSFRNIA DFGMDTDPLF LHQWCIDDYS SLASAFSEGF HHSCTTSEQP PMVLKRPAEA  60
SLIGESRPLK QLKTSNWTMN SSVKPEKVSP NSSPVVGVVK PKEEAWAESI VNQNYVLKPC  120
QGIKRVSPNN KLAQAQDHIL AERKRREKLS QRFIALSTLI PGLKKMDKAS VLGDAIKYMK  180
QLQERVKTLE EKAKKMSIES VVLVKKYEVV GDGEDSSSID QSFSSSVSES LPEIEARFCD  240
KDVLISIHCE KRKGVLEKIV GEIEKLHLSV VNSSVMTFGD SALSITIIAQ KDEEFGLNMK  300
ELVKNLRSAI KAFI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A1e-13137211880Transcription factor MYC2
5gnj_B1e-13137211880Transcription factor MYC2
5gnj_E1e-13137211880Transcription factor MYC2
5gnj_F1e-13137211880Transcription factor MYC2
5gnj_G1e-13137211880Transcription factor MYC2
5gnj_I1e-13137211880Transcription factor MYC2
5gnj_M1e-13137211880Transcription factor MYC2
5gnj_N1e-13137211880Transcription factor MYC2
Search in ModeBase
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By ethylene (ACC) and jasmonic acid (JA) treatments. {ECO:0000269|PubMed:12679534}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011088147.11e-144transcription factor bHLH18-like
SwissprotQ9T0724e-65BH025_ARATH; Transcription factor bHLH25
TrEMBLA0A0H3YBQ31e-146A0A0H3YBQ3_SALMI; Basic helix-loop-helix transcription factor
STRINGXP_009616821.11e-107(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA17602461