PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ote100192480011 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
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Family | NAC | ||||||||
Protein Properties | Length: 246aa MW: 27288.7 Da PI: 9.599 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 101.7 | 9.9e-32 | 12 | 85 | 54 | 128 |
NAM 54 eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +ekewyfFs+rd+ky++g+r+nr++ sgyWkatg+dk +++ +g++vg+kk Lvfy g+apkg+kt+W+mheyrl Ote100192480011|100192480011 12 GEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKIITT-EGRKVGIKKALVFYIGKAPKGTKTNWIMHEYRL 85 689**********************************9999.999****************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 41.85 | 1 | 108 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 2.75E-42 | 8 | 109 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.7E-15 | 15 | 85 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 246 aa Download sequence Send to blast |
MDFCGADKAL FGEKEWYFFS PRDRKYPNGS RPNRVAGSGY WKATGTDKII TTEGRKVGIK 60 KALVFYIGKA PKGTKTNWIM HEYRLSESPR KSGSSKLDDW VLCRIYKKNS SGQDRAAMGG 120 VQRKEYSHDS SSSSSSQYDD KLNLQRLNSA NFDWATLAGL NPVWPELIQA QQQTSVVQND 180 AYAPAGDVMD EVHSGSANQR VANSGFLPHH VTGGSLDPFS XXXXXXXTRI RMAGSGLGNE 240 KTDVFD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 3e-66 | 7 | 113 | 67 | 173 | NAC domain-containing protein 19 |
3swm_B | 3e-66 | 7 | 113 | 67 | 173 | NAC domain-containing protein 19 |
3swm_C | 3e-66 | 7 | 113 | 67 | 173 | NAC domain-containing protein 19 |
3swm_D | 3e-66 | 7 | 113 | 67 | 173 | NAC domain-containing protein 19 |
3swp_A | 3e-66 | 7 | 113 | 67 | 173 | NAC domain-containing protein 19 |
3swp_B | 3e-66 | 7 | 113 | 67 | 173 | NAC domain-containing protein 19 |
3swp_C | 3e-66 | 7 | 113 | 67 | 173 | NAC domain-containing protein 19 |
3swp_D | 3e-66 | 7 | 113 | 67 | 173 | NAC domain-containing protein 19 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that acts downstream of MYC2 in the jasmonate-mediated response to Botrytis cinerea infection (PubMed:28733419). With MYC2 forms a transcription module that regulates wounding-responsive genes (PubMed:28733419). Involved in jasmonate- and coronatine-mediated stomatal reopening in response to Pseudomonas syringae pv tomato DC3000 infection (PubMed:25005917). Regulates the expression of threonine deaminase 2 (TD2) through promoter binding (PubMed:28733419). {ECO:0000269|PubMed:25005917, ECO:0000269|PubMed:28733419}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by jasmonate (JA) (PubMed:25005917, PubMed:28733419, PubMed:30610166). Induced by wounding (PubMed:28733419, PubMed:25005917). Induced by infection with the fungal pathogen Botrytis cinerea (PubMed:28733419). Induced by coronatine (PubMed:25005917). {ECO:0000269|PubMed:25005917, ECO:0000269|PubMed:28733419, ECO:0000269|PubMed:30610166}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011098342.1 | 7e-92 | NAC domain-containing protein 72 | ||||
Swissprot | A0A3Q7HH64 | 1e-78 | JA2L_SOLLC; NAC domain-containing protein JA2L | ||||
TrEMBL | A0A4D8YKK0 | 4e-92 | A0A4D8YKK0_SALSN; Uncharacterized protein | ||||
STRING | Migut.M00863.1.p | 7e-87 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3122 | 24 | 52 |
Publications ? help Back to Top | |||
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