PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100192340071
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family MYB
Protein Properties Length: 285aa    MW: 31004.7 Da    PI: 6.3989
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100192340071genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.52.4e-162873147
                                  TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
               Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                                  +g+W+++Ed  l ++v  +G ++W++Iar ++ gR++k+c++rw + 
  Ote100192340071|100192340071 28 KGPWSPDEDAMLSQLVGNFGARNWSLIARGIP-GRSGKSCRLRWCNQ 73
                                  79******************************.***********985 PP
2Myb_DNA-binding56.65.8e-1880124147
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                   r++++ eEd ++++a+  +G++ W++Iar ++ gRt++ +k++w++ 
  Ote100192340071|100192340071  80 RKPFSDEEDRIILQAHSIHGNK-WASIARLLP-GRTDNAIKNHWNST 124
                                   789*******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.6282374IPR017930Myb domain
SuperFamilySSF466895.53E-3026121IPR009057Homeodomain-like
SMARTSM007171.3E-132776IPR001005SANT/Myb domain
PfamPF002491.1E-152873IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-252981IPR009057Homeodomain-like
CDDcd001671.56E-133072No hitNo description
PROSITE profilePS5129427.25475129IPR017930Myb domain
SMARTSM007173.0E-1779127IPR001005SANT/Myb domain
PfamPF002491.4E-1580124IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.7E-2482128IPR009057Homeodomain-like
CDDcd001671.37E-1382125No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MSGGGGEEDE VMLENGGGAS KKSVDQVKGP WSPDEDAMLS QLVGNFGARN WSLIARGIPG  60
RSGKSCRLRW CNQLDPTVKR KPFSDEEDRI ILQAHSIHGN KWASIARLLP GRTDNAIKNH  120
WNSTLRRRTM EQWKSKLEAG NVVEDTTSVE KSKASSEETP SFGAAYSVKS SEGKDVSSLE  180
RVDDSHIFDK AQITEISTGT LAVFRPIPRI CALSVYNPIN GTEDACPSPR AASNSDAGSS  240
KLNVMVPHQC GHGCCEISNV MAMVNSLLGP EFIDYVEPPS FKSHE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A8e-42251294108B-MYB
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011094946.11e-143transcription factor MYB1
TrEMBLA0A059PSP01e-162A0A059PSP0_SALMI; MYB-related transcription factor
STRINGXP_009783755.11e-119(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA26112454