PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ote100192040001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
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Family | GRAS | ||||||||
Protein Properties | Length: 257aa MW: 28594.9 Da PI: 9.8139 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 248.9 | 2e-76 | 20 | 257 | 1 | 242 |
GRAS 1 lvelLlecAeavssgdle........laqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn 73 lv++L++cAeav++++++ l++++ la ++ +m+++a+yf+eALa+r+++ +y p+ Ote100192040001|100192040001 20 LVHTLMACAEAVQQEKMKlxxxxxxxXXXXLVKQVGLLAVSQVGAMRKVATYFAEALARRVYK----IY----PTXXXXXX 92 689***********99985555555566789*******************************9....55....44444444 PP GRAS 74 sseelaalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgs 154 s+ l++ f+e+ P+lkf+h+taNqaIlea++g +rvH+iDf++ qG+QWpaL+qaLa Rp+gpp +R+Tg+g+p++++ Ote100192040001|100192040001 93 YSDILHM--HFYETGPYLKFAHFTANQAILEAFAGTNRVHVIDFSLRQGMQWPALMQALALRPGGPPAFRLTGIGPPQPDN 171 6777776..4*********************************************************************** PP GRAS 155 keeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp..gEalaVnlvlqlhrlldesvsleserdevLklvks 233 +++l+++g++La++Ae++gv+fef+ lv+++l+dl++++L+++p E++aVn+v++lhrll+++ ++e+ vL+ +ks Ote100192040001|100192040001 172 SDALQQVGWKLAQVAEAIGVEFEFRGLVTNSLADLDVKMLDIRPggVETVAVNSVFELHRLLARPRAMEK----VLDSIKS 248 ********************************************888***************99999999....******* PP GRAS 234 lsPkvvvvv 242 +sPk+v+vv Ote100192040001|100192040001 249 MSPKIVTVV 257 *******97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 43.591 | 1 | 257 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 6.9E-74 | 20 | 257 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 257 aa Download sequence Send to blast |
MAILQRRXVL VDSQDTGVRL VHTLMACAEA VQQEKMKLXX XXXXXXXXXL VKQVGLLAVS 60 QVGAMRKVAT YFAEALARRV YKIYPTXXXX XXYSDILHMH FYETGPYLKF AHFTANQAIL 120 EAFAGTNRVH VIDFSLRQGM QWPALMQALA LRPGGPPAFR LTGIGPPQPD NSDALQQVGW 180 KLAQVAEAIG VEFEFRGLVT NSLADLDVKM LDIRPGGVET VAVNSVFELH RLLARPRAME 240 KVLDSIKSMS PKIVTVV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 6e-32 | 27 | 257 | 26 | 249 | Protein SCARECROW |
5b3h_A | 6e-32 | 27 | 257 | 25 | 248 | Protein SCARECROW |
5b3h_D | 6e-32 | 27 | 257 | 25 | 248 | Protein SCARECROW |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway (By similarity). Its degradation is not essential for germination. {ECO:0000250, ECO:0000269|PubMed:15347801}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011097451.1 | 1e-139 | DELLA protein GAI | ||||
Refseq | XP_012838438.1 | 1e-139 | PREDICTED: DELLA protein GAI-like | ||||
Refseq | XP_027074537.1 | 1e-138 | DELLA protein GAI-like | ||||
Refseq | XP_027078270.1 | 1e-138 | DELLA protein GAI-like | ||||
Refseq | XP_027178624.1 | 1e-138 | DELLA protein GAI-like | ||||
Swissprot | Q7Y1B6 | 1e-138 | GAI_SOLLC; DELLA protein GAI | ||||
TrEMBL | A0A4D8YZF2 | 1e-144 | A0A4D8YZF2_SALSN; DELLA protein | ||||
STRING | Migut.K00894.1.p | 1e-138 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2126 | 24 | 62 |
Publications ? help Back to Top | |||
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