PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100191900061
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family bHLH
Protein Properties Length: 459aa    MW: 51601.2 Da    PI: 8.5262
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100191900061genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.84e-08268310754
                                   HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                           HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                                     Er+RR+ri+++   Lr l+Pk      +K++  ++L  A +YIk+L
  Ote100191900061|100191900061 268 VTERNRRKRIKDGELALRALVPKI-----TKMDRTATLMDAADYIKEL 310
                                   57*********************7.....6****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.2E-758146IPR025610Transcription factor MYC/MYB N-terminal
SuperFamilySSF474592.22E-12261324IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088813.173261310IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.09E-8263315No hitNo description
Gene3DG3DSA:4.10.280.101.4E-11264327IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-7267316IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.0E-5268310IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.70.2604.5E-4371433No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048657Biological Processanther wall tapetum cell differentiation
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 459 aa     Download sequence    Send to blast
MAALEAGVEW LRPLANNKPW EYCVIWKLGD DPSSGGRRDV GVGIKIKDED FVECKDTLIK  60
HPIRSDACKT LAQLPSVIPL YSGIHGDVVI SNIPRWTTQN ANGSLSNDEP NGTRVLIPVT  120
WGLIELFTTK HVPRDEKLID FISAHFRAPL KQESMVDNMQ TNYKEKWPSS LHYLKIPHQI  180
SQPTNYSNLE GSSTCSSISE ELHLLQLTPD YRVLSGLAME QYADSPSRNL RLRKKKCADL  240
ALTNGNEKGS IKVRQKSEKG PFKSKNLVTE RNRRKRIKDG ELALRALVPK ITKMDRTATL  300
MDAADYIKEL LETVRNYKDE LQALDEEDRN ETNTKAAHSV LVRQCADKKG SEEKAPAVVE  360
VEVNQLGKKD FLLKIICKQK CGSFSRLVQA INSLGLQVED ANVTTLHGLM SNVLKVEAVR  420
ADLDPNTLKR SLVRLVCITA SMLLDLEMYN SSYNHHINC
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011080803.11e-170transcription factor bHLH90
TrEMBLA0A4D9AT780.0A0A4D9AT78_SALSN; Uncharacterized protein
STRINGMigut.D00743.1.p1e-145(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA99292227