PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100191040101
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family MYB_related
Protein Properties Length: 426aa    MW: 47686.2 Da    PI: 9.6227
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100191040101genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.82.4e-08369423147
                                   TSSS-HHHHHHHHHHHHHTTTT....-HHHHHHHHT....TTS-HHHHHHHHHHH CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg....tWktIartmg....kgRtlkqcksrwqky 47 
                                   r+ WT+ E+e l  +v ++ ++    +W++I  +       +Rt+ ++k++w++ 
  Ote100191040101|100191040101 369 RLMWTEREEEALRAGVDRYSNEsknlSWRKILDMGKdhfdSTRTPADLKDKWRNM 423
                                   678*****************************9888*****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579031.77E-9358IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.102.7E-8657IPR013083Zinc finger, RING/FYVE/PHD-type
SMARTSM002499.9E-7853IPR001965Zinc finger, PHD-type
PROSITE patternPS013590952IPR019786Zinc finger, PHD-type, conserved site
PROSITE profilePS500907.712364424IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.2E-8365423IPR009057Homeodomain-like
SuperFamilySSF466893.51E-9367423IPR009057Homeodomain-like
SMARTSM007178.0E-4368426IPR001005SANT/Myb domain
CDDcd116605.12E-11371424No hitNo description
PfamPF002497.8E-7371423IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 426 aa     Download sequence    Send to blast
MDWSEKISCI KCDKGGILLV CSENGCPIAV HEGCLGCPAK FDDSGRFYCP YCLYKQAVAE  60
LRKAREYAFA RKNALNVFMD EKVMGSEKPT RENKTHPEDG NNQSKSSEAN VGIAGDDGKS  120
KSNTNGITDQ PVRLDGEEHI KDCAGSESDD PSLEILGEKN DRTEEDKNKK RRLGXXXXXX  180
XENRETSSAS TDDDAPLIGH ATAKTGSKRS KQVDKRKTSV EEEKTQEENR ETSSASTDDD  240
AXXXXXXXXX XXXXXXXXLG MRELREDLKG ASKLTNAKPQ AKRGSKRSKQ VDKDSDADQV  300
PSKRVKKYGK KKQTSTNVTP TRRSSRKSSA PKRTEKVSNK EVGSPTRLRK PEPSVKLASD  360
AFGSAKRKRL MWTEREEEAL RAGVDRYSNE SKNLSWRKIL DMGKDHFDST RTPADLKDKW  420
RNMTGK
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8862910