PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100191040081
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family MYB_related
Protein Properties Length: 440aa    MW: 49086.9 Da    PI: 9.6171
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100191040081genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.82.6e-08383437147
                                   TSSS-HHHHHHHHHHHHHTTTT....-HHHHHHHHT....TTS-HHHHHHHHHHH CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg....tWktIartmg....kgRtlkqcksrwqky 47 
                                   r+ WT+ E+e l  +v ++ ++    +W++I  +       +Rt+ ++k++w++ 
  Ote100191040081|100191040081 383 RLMWTEREEEALRAGVDRYSNEsknlSWRKILDMGKdhfdSTRTPADLKDKWRNM 437
                                   678*****************************9888*****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579031.33E-91672IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.102.4E-81971IPR013083Zinc finger, RING/FYVE/PHD-type
SMARTSM002499.9E-72267IPR001965Zinc finger, PHD-type
PROSITE patternPS0135902366IPR019786Zinc finger, PHD-type, conserved site
PROSITE profilePS500907.712378438IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.3E-8379437IPR009057Homeodomain-like
SuperFamilySSF466893.67E-9381437IPR009057Homeodomain-like
SMARTSM007178.0E-4382440IPR001005SANT/Myb domain
CDDcd116604.10E-11385438No hitNo description
PfamPF002498.2E-7385437IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 440 aa     Download sequence    Send to blast
MELSSTAVAG ILVKMDWSEK ISCIKCDKGG ILLVCSENGC PIAVHEGCLG CPAKFDDSGR  60
FYCPYCLYKQ AVAELRKARE YAFARKNALN VFMDEKVMGS EKPTRENKTH PEDGNNQSKS  120
SEANVGIAGD DGKSKSNTNG ITDQPVRLDG EEHIKDCAGS ESDDPSLEIL GEKNDRTEED  180
KNKKRRLGXX XXXXXENRET SSASTDDDAP LIGHATAKTG SKRSKQVDKR KTSVEEEKTQ  240
EENRETSSAS TDDDAXXXXX XXXXXXXXXX XXLGMRELRE DLKGASKLTN AKPQAKRGSK  300
RSKQVDKDSD ADQVPSKRVK KYGKKKQTST NVTPTRRSSR KSSAPKRTEK VSNKEVGSPT  360
RLRKPEPSVK LASDAFGSAK RKRLMWTERE EEALRAGVDR YSNESKNLSW RKILDMGKDH  420
FDSTRTPADL KDKWRNMTGK
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8862910