PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100190950131
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family ARF
Protein Properties Length: 669aa    MW: 74140.8 Da    PI: 7.0135
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100190950131genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.61.1e-23123224199
                                   EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT- CS
                            B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangL 74 
                                   f k+lt+sd+++ g +++p+ +ae++        +++ +  t+  +d +g++W++++iyr++++r++lt+GW++Fv++++L
  Ote100190950131|100190950131 123 FAKTLTQSDANNGGGFSVPRYCAETIfprldysAEPPVQ--TILAKDVQGEVWKFRHIYRGTPRRHLLTTGWSNFVNQKKL 201
                                   89****************************986445444..8999************************************ PP

                                   -TT-EEEEEE-SSSEE..EEEEE-S CS
                            B3  75 kegDfvvFkldgrsefelvvkvfrk 99 
                                    +gD++vF   + +++ l+v+++r+
  Ote100190950131|100190950131 202 VAGDSIVFL--RAENGDLCVGIRRA 224
                                   *********..4488999****997 PP
2Auxin_resp115.25.8e-38288370283
                    Auxin_resp   2 ahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrs 81 
                                   a  a+ +++FevvY+Prast+eFvv++++v++a++ ++++GmRfkmafetedss++++ +Gt+++v+  dp++WpnS+Wr+
  Ote100190950131|100190950131 288 ACLAAGGQPFEVVYYPRASTPEFVVRASSVRAAMRAQWCPGMRFKMAFETEDSSRISWfMGTISSVQVDDPIHWPNSPWRL 368
                                   5567889************************************************************************** PP

                    Auxin_resp  82 Lk 83 
                                   L+
  Ote100190950131|100190950131 369 LQ 370
                                   97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.58E-29112224IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.9E-36117226IPR015300DNA-binding pseudobarrel domain
CDDcd100171.89E-21122223No hitNo description
PROSITE profilePS5086313.225123225IPR003340B3 DNA binding domain
PfamPF023628.9E-22123224IPR003340B3 DNA binding domain
SMARTSM010192.7E-22123225IPR003340B3 DNA binding domain
PfamPF065071.7E-32288370IPR010525Auxin response factor
PROSITE profilePS5174514.005586664IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 669 aa     Download sequence    Send to blast
MIDVLHSLEK PMDQLEKYLD PQLWHACAGG MAQIPPLNSN VYYLPQGHAE HAARKIDFRR  60
FPQISPLVPC KLSSIKYLAD AETDEVYAKI GLVPLRGREV DVENEGGLMG FDRNEEKEKL  120
NSFAKTLTQS DANNGGGFSV PRYCAETIFP RLDYSAEPPV QTILAKDVQG EVWKFRHIYR  180
GTPRRHLLTT GWSNFVNQKK LVAGDSIVFL RAENGDLCVG IRRAKAGIGG GPEVSSGWNT  240
GAANGASSLY KGSYGFRNEN SLSKGNGECD FGVKEKGNLR AESVIEAACL AAGGQPFEVV  300
YYPRASTPEF VVRASSVRAA MRAQWCPGMR FKMAFETEDS SRISWFMGTI SSVQVDDPIH  360
WPNSPWRLLQ VAWDEPDLLQ NVKRVNPWLV ELVSNIPAIH PSPFSPVSKR PRFSQHLEFP  420
LSQFPMSTLL NNPLSPSSPL CCLPDNISTG IQGARHAQFV LSSPDLHINK LNTGLRPFDF  480
KPLDYAAELP NFVSGNPLSN GLKMENSTPY LKKPDKENKR EKAPILFLFG QPILTEQQIS  540
QSNSLSDGNH DNVGNVSNAS GSAVIQNSPP EASSDEEFPR LKDQKHEHCK VFMESEDVGR  600
TLDLSTLQSY EELYRKLGSM FGISNISSNV VYSNTVGTTK TIGDEPFGDF VLKAKRLTIQ  660
TDSSKQLPR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-751939151388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011084326.10.0auxin response factor 18
RefseqXP_020551141.10.0auxin response factor 18
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLA0A191T8T40.0A0A191T8T4_SALMI; Auxin response factor
STRINGXP_009784518.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA59224115
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]