PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ote100190400061 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
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Family | TALE | ||||||||
Protein Properties | Length: 476aa MW: 51778.6 Da PI: 8.9035 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 28.5 | 2.5e-09 | 213 | 250 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +++ LAk++gLt +qV++WF N R + Ote100190400061|100190400061 213 FEHflHPYPKDSDKLMLAKQTGLTRSQVSNWFINARVR 250 664459******************************87 PP | |||||||
2 | BELL | 113.1 | 1.5e-36 | 77 | 148 | 1 | 72 |
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 erqe+q+kkakL+++l+eV++rY+qy++q+q+vi Fe++ag g+ak Yt+lAl +iS++FrcLkdai +qi Ote100190400061|100190400061 77 ERQEIQMKKAKLVNMLDEVEQRYRQYQHQMQIVITWFEQAAGAGAAKTYTALALETISKQFRCLKDAILGQI 148 79********************************************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 7.1E-60 | 3 | 146 | IPR006563 | POX domain |
Pfam | PF07526 | 3.6E-48 | 8 | 144 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 12.115 | 191 | 254 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 8.2E-25 | 193 | 254 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 1.36E-11 | 194 | 251 | No hit | No description |
SMART | SM00389 | 5.1E-7 | 194 | 258 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 4.28E-15 | 195 | 253 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 3.9E-18 | 211 | 250 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009610 | Biological Process | response to symbiotic fungus | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0010197 | Biological Process | polar nucleus fusion | ||||
GO:0010201 | Biological Process | response to continuous far red light stimulus by the high-irradiance response system | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 476 aa Download sequence Send to blast |
GVNGVQSVLL SSKYLSAAQE LLDEVVNVGK GVKTAVESSK GQPKSNGDSA AAAASGEAHS 60 GGGDSSGKRG AELTTAERQE IQMKKAKLVN MLDEVEQRYR QYQHQMQIVI TWFEQAAGAG 120 AAKTYTALAL ETISKQFRCL KDAILGQIRG ASKSLGEEEN VEGKIEGSRL KYVDNQMRQQ 180 RALQQLGMIQ YNAWRPQRGL PERSVSVLRA WLFEHFLHPY PKDSDKLMLA KQTGLTRSQV 240 SNWFINARVR LXXXLEADGR GNVKSPGAEQ QRNKTFVDNF VNSNTVSPPP PSPNGTTISG 300 FKLMSEMGSS PKKLRISDML HSTTTAAATI PLPINMDSKP SDSDNDTMLM KFGGDRQERD 360 GFTLMGAPTN VIGGFGAYPM GDLGRFGTEQ FQTPYSGNGV SLTLGLPHCE NIAMSGAHQS 420 FLPNQTMQLG RTVEIGEAND FGGMDASANT HPANVYDINI QNRKRFAAQL LPDFVA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4xrs_A | 3e-14 | 200 | 251 | 1 | 52 | Homeobox protein Meis1 |
4xrs_B | 3e-14 | 200 | 251 | 1 | 52 | Homeobox protein Meis1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020553279.1 | 0.0 | BEL1-like homeodomain protein 1 | ||||
Swissprot | Q9SJ56 | 1e-133 | BLH1_ARATH; BEL1-like homeodomain protein 1 | ||||
TrEMBL | A0A2G9HAC1 | 0.0 | A0A2G9HAC1_9LAMI; Transcription factor MEIS1 | ||||
STRING | XP_009628712.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1478 | 24 | 67 |
Publications ? help Back to Top | |||
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