PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100190280021
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family MYB
Protein Properties Length: 1025aa    MW: 115607 Da    PI: 6.1647
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100190280021genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.63.3e-09394438246
                                   SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
               Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                   g+WT+ Ed+ +++ +++ G  +W  Ia+ +g++Rt+ qc  r+q 
  Ote100190280021|100190280021 394 GPWTAMEDKNILHIIQEKGLSNWIDIAASLGTNRTPFQCLARYQR 438
                                   89*****************************************96 PP
2Myb_DNA-binding44.92.7e-14447492248
                                   SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                     WT +Ed +l  av+ +G  +W  +a+ m  gRt+ qc +rw+k l
  Ote100190280021|100190280021 447 REWTSDEDNQLRAAVETYGESNWQVVASAME-GRTGTQCSNRWLKTL 492
                                   68*****************************.***********9975 PP
3Myb_DNA-binding50.83.9e-16500544247
                                   SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
               Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                   g+WT eEd++l+ a +++G+  Wk++ar+++ gRt  qc++rw + 
  Ote100190280021|100190280021 500 GKWTLEEDKRLKVAATLFGPQKWKKVARCVP-GRTHVQCRERWVNC 544
                                   89*****************************.***********986 PP
4Myb_DNA-binding46.49.1e-15553595347
                                   SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
               Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                    WT+eEd++l +a++++G   W+++a++++ +Rt++qc  rw  +
  Ote100190280021|100190280021 553 EWTEEEDLKLEEAIAKHGYS-WSKVAACIP-HRTDNQCWRRWKVL 595
                                   7*****************99.*********.***********865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.272289387IPR017877Myb-like domain
SMARTSM007176.8E-5293389IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.4E-12296312IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.4E-12360399IPR009057Homeodomain-like
SuperFamilySSF466893.06E-16368437IPR009057Homeodomain-like
PROSITE profilePS500909.106388440IPR017877Myb-like domain
SMARTSM007172.5E-7392442IPR001005SANT/Myb domain
PfamPF002491.8E-8394438IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.2E-13400448IPR009057Homeodomain-like
SuperFamilySSF466899.66E-20424494IPR009057Homeodomain-like
PROSITE profilePS5129419.968441496IPR017930Myb domain
SMARTSM007173.1E-14445494IPR001005SANT/Myb domain
PfamPF002491.1E-12447491IPR001005SANT/Myb domain
CDDcd001672.09E-11448492No hitNo description
Gene3DG3DSA:1.10.10.602.3E-16449495IPR009057Homeodomain-like
SuperFamilySSF466892.52E-26496592IPR009057Homeodomain-like
SMARTSM007171.8E-12498547IPR001005SANT/Myb domain
PROSITE profilePS5129413.704498545IPR017930Myb domain
PfamPF002492.1E-13500544IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.6E-20500550IPR009057Homeodomain-like
CDDcd001673.79E-10501543No hitNo description
PROSITE profilePS5129424.617546600IPR017930Myb domain
SMARTSM007171.6E-14550598IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-17551594IPR009057Homeodomain-like
PfamPF002492.7E-13553594IPR001005SANT/Myb domain
CDDcd001671.42E-11553596No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1025 aa     Download sequence    Send to blast
MSSSNGESSD NDDGFNEDME ALRRACQLIG ETPSASGIAS EAALSXXXXX XXXXXXXXDG  60
DDDLQLVQRI QERFAVPMDS GEEPLVMKPL CTLMPDWTDN DDIEDDYATL RAIQRRFAAY  120
NDDSLKDNFE DNLHRPEQVG ATIIDSERET SNSFVERTNA RERFLNCVDT SKPTEKLDAC  180
DHVGGSCGAV ECYGRAADDV VGLPLKTSHF PNSALSFVDA IKKNRSCQKL LRGKMMQMEA  240
KMEELGKLIE RVRILKDFQL NEKNIPASYK GPPENVHVLN YNEALATFSI PIKREQWSKE  300
ERKNLVKGVK QQFQEMLLQR SVDLLGEADG SYDSSNVDNI MKSLKDLDIT PERMRSFLPK  360
VNWEQIAAMY VPGRTGAECQ ARFFNSEDPL INHGPWTAME DKNILHIIQE KGLSNWIDIA  420
ASLGTNRTPF QCLARYQRSL NASILKREWT SDEDNQLRAA VETYGESNWQ VVASAMEGRT  480
GTQCSNRWLK TLHPTRARSG KWTLEEDKRL KVAATLFGPQ KWKKVARCVP GRTHVQCRER  540
WVNCLDPSLN KAEWTEEEDL KLEEAIAKHG YSWSKVAACI PHRTDNQCWR RWKVLFPTEV  600
QLLQTARKIQ KTALISNFVD RESERPALGP NDFRLPATHC ITGSENIDSS MRKKKRSRRG  660
EAHQPIEEDT LSGEIYPEKV LRLTDGSELG TQGRSMHREG RRKSSCSMKG NAGPSSDALY  720
MLSNGEEIGE SRVNDGNIKR KPPSQTKRSG MRAAATSVEI IDVSCSKEYE HSDPIEETDL  780
NMQNIPLEAE LDGDNATIQR VKASKLHPRR RNSRTLKELQ EIHPKXXXPG KAVTKSKAKD  840
KKLIDARNDH QSSFSNTMCL TDVRRTREAS SGTKSKNSGR NIIVNPSGSP DQYVRCDLDG  900
AVSTNLDQSA NAYWDTDMQS QENVQALLET EDRSTPASAL EQSGAGRPSS ILVYSRRKRK  960
RSCEMNIRPC SGVASVLDHT EQMTIVEEGW RSGDNAWQDQ ASEVEVEDDD CTLAHFLQQT  1020
KEKDR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C8e-313655866155MYB PROTO-ONCOGENE PROTEIN
1h89_C8e-313655866155MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011084456.10.0uncharacterized protein LOC105166700 isoform X1
RefseqXP_020552481.10.0uncharacterized protein LOC105166700 isoform X1
RefseqXP_020552485.10.0uncharacterized protein LOC105166700 isoform X1
TrEMBLA0A4D8Z1Z00.0A0A4D8Z1Z0_SALSN; Myb proto-oncogene protein, plant
STRINGMigut.D01451.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA108762124