PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100190240111
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family MIKC_MADS
Protein Properties Length: 236aa    MW: 26956.5 Da    PI: 7.2745
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100190240111genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF87.76.4e-281059251
                                  ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                        SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                                  ri+n++ rqvtfskRr g+lKKA+ELS+LCdaev +i+fsstgkl++y+s
  Ote100190240111|100190240111 10 RIDNSTSRQVTFSKRRSGLLKKAKELSILCDAEVGLIVFSSTGKLHDYAS 59
                                  8***********************************************86 PP
2K-box59.31.6e-2081165998
                         K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqe 89 
                                   + +++ + +q+e+++L+++++ Lq+++R+llGe+++ Ls+++Lq+Le+qLe slk      ++ l+++i+el  k + +++
  Ote100190240111|100190240111  81 NPASEIKVWQREAENLRQQLQYLQESHRKLLGEEISGLSIRDLQNLENQLEMSLKG-----EQTLTAEIKELNWKGNHIHQ 156
                                   56778999**********************************************76.....9******************* PP

                         K-box  90 enkaLrkkl 98 
                                   en++L+kk+
  Ote100190240111|100190240111 157 ENMELHKKV 165
                                   *******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004324.7E-40160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.707161IPR002100Transcription factor, MADS-box
CDDcd002653.94E-45278No hitNo description
SuperFamilySSF554551.57E-32291IPR002100Transcription factor, MADS-box
PRINTSPR004042.9E-28323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003195.1E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004042.9E-282338IPR002100Transcription factor, MADS-box
PRINTSPR004042.9E-283859IPR002100Transcription factor, MADS-box
PfamPF014861.1E-1785165IPR002487Transcription factor, K-box
PROSITE profilePS5129711.23586185IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MGRGKIVIRR IDNSTSRQVT FSKRRSGLLK KAKELSILCD AEVGLIVFSS TGKLHDYASS  60
SMKSIIEKYN KFKEEHHQLP NPASEIKVWQ REAENLRQQL QYLQESHRKL LGEEISGLSI  120
RDLQNLENQL EMSLKGEQTL TAEIKELNWK GNHIHQENME LHKKVNLVVQ ENAELWKKVY  180
DLGGTSEANP HSINNGYAFI PINLEQSQQE KEKNEAPKDA MNLGLTLETG FSCSND
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A2e-23181181MEF2C
5f28_B2e-23181181MEF2C
5f28_C2e-23181181MEF2C
5f28_D2e-23181181MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011087974.21e-114MADS-box transcription factor 23-like
RefseqXP_020551897.11e-114MADS-box transcription factor 23-like
RefseqXP_020551898.11e-114MADS-box transcription factor 23-like
RefseqXP_020551899.11e-114MADS-box transcription factor 23-like
SwissprotQ6EP496e-89MAD27_ORYSJ; MADS-box transcription factor 27
TrEMBLA0A4D9BZL41e-114A0A4D9BZL4_SALSN; MADS-box transcription factor, plant
STRINGGorai.008G018100.11e-108(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA6792056
Publications ? help Back to Top
  1. Puig J, et al.
    Analysis of the expression of the AGL17-like clade of MADS-box transcription factors in rice.
    Gene Expr. Patterns, 2013 Jun-Jul. 13(5-6): p. 160-70
    [PMID:23466806]
  2. Yu C, et al.
    The effects of fluctuations in the nutrient supply on the expression of five members of the AGL17 clade of MADS-box genes in rice.
    PLoS ONE, 2014. 9(8): p. e105597
    [PMID:25140876]