PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100189900031
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family MIKC_MADS
Protein Properties Length: 200aa    MW: 23351.8 Da    PI: 10.1731
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100189900031genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF85.92.3e-27959151
                                  S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                        SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                                  krienk+ rqvtfskRr g+ KKA+E+SvLCda+va+++fs++gkl+e+ss
  Ote100189900031|100189900031  9 KRIENKISRQVTFSKRRSGLWKKANEISVLCDADVALLVFSTKGKLFEFSS 59
                                  79***********************************************96 PP
2K-box84.32.6e-28861721399
                         K-box  13 kaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenka 93 
                                     e+l+ e+ kL++++e L+r+ R+  GedL++Lsl+e+q+Le+q++++lk+iR+kKn+l++++i+elqkkek l ++n+a
  Ote100189900031|100189900031  86 PKENLSLEYPKLESRLELLERNMRNCAGEDLDPLSLREIQSLEHQIDNALKRIRTKKNQLMHDSISELQKKEKLLLDQNNA 166
                                   46899**************************************************************************** PP

                         K-box  94 Lrkkle 99 
                                   L+k+ +
  Ote100189900031|100189900031 167 LKKQKK 172
                                   **9866 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.2E-36160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006630.88161IPR002100Transcription factor, MADS-box
CDDcd002651.39E-37278No hitNo description
SuperFamilySSF554557.85E-31278IPR002100Transcription factor, MADS-box
PRINTSPR004045.5E-29323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003191.4E-241057IPR002100Transcription factor, MADS-box
PRINTSPR004045.5E-292338IPR002100Transcription factor, MADS-box
PRINTSPR004045.5E-293859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129714.83687183IPR002487Transcription factor, K-box
PfamPF014863.0E-2387170IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MGRGRVQLKR IENKISRQVT FSKRRSGLWK KANEISVLCD ADVALLVFST KGKLFEFSSH  60
SSIARVIERY EQHTYSQKKV GTPFEPKENL SLEYPKLESR LELLERNMRN CAGEDLDPLS  120
LREIQSLEHQ IDNALKRIRT KKNQLMHDSI SELQKKEKLL LDQNNALKKQ KKEKEKLQQR  180
GESCEQEQQL HNTLPPNLTI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P1e-17174173Myocyte-specific enhancer factor 2B
1tqe_Q1e-17174173Myocyte-specific enhancer factor 2B
1tqe_R1e-17174173Myocyte-specific enhancer factor 2B
1tqe_S1e-17174173Myocyte-specific enhancer factor 2B
5f28_A1e-17173172MEF2C
5f28_B1e-17173172MEF2C
5f28_C1e-17173172MEF2C
5f28_D1e-17173172MEF2C
6byy_A1e-17174173MEF2 CHIMERA
6byy_B1e-17174173MEF2 CHIMERA
6byy_C1e-17174173MEF2 CHIMERA
6byy_D1e-17174173MEF2 CHIMERA
6bz1_A1e-17174173MEF2 CHIMERA
6bz1_B1e-17174173MEF2 CHIMERA
6c9l_A1e-17174173Myocyte-specific enhancer factor 2B
6c9l_B1e-17174173Myocyte-specific enhancer factor 2B
6c9l_C1e-17174173Myocyte-specific enhancer factor 2B
6c9l_D1e-17174173Myocyte-specific enhancer factor 2B
6c9l_E1e-17174173Myocyte-specific enhancer factor 2B
6c9l_F1e-17174173Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012855287.17e-97PREDICTED: agamous-like MADS-box protein AGL8
SwissprotD7SMN62e-82FULL_VITVI; Agamous-like MADS-box protein FUL-L
TrEMBLA0A022RW951e-98A0A022RW95_ERYGU; Uncharacterized protein
STRINGMigut.H00589.1.p2e-99(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4992397
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]