PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100189350241
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family TALE
Protein Properties Length: 589aa    MW: 66495.3 Da    PI: 5.3912
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100189350241genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox29.51.2e-093403771954
                                   HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
                      Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                                   Fe   ++yp+ +e+  LA+++gLt +qV++WF N R +
  Ote100189350241|100189350241 340 FEHflHPYPKDSEKIMLARQTGLTRSQVSNWFINARVR 377
                                   664459******************************88 PP
2BELL58.91.2e-19234273140
                          BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeav 40 
                                   e+qelq+k +kLls+l+eVd+rY+qy++q+q+v+ssF++ 
  Ote100189350241|100189350241 234 EKQELQNKLTKLLSMLDEVDRRYRQYYHQMQIVVSSFDIQ 273
                                   689**********************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005749.4E-26166287IPR006563POX domain
PfamPF075264.5E-31172273IPR006563POX domain
PROSITE profilePS5007112.325318381IPR001356Homeobox domain
CDDcd000868.70E-13321382No hitNo description
SMARTSM003894.3E-10321385IPR001356Homeobox domain
SuperFamilySSF466897.7E-18322388IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.7E-29324387IPR009057Homeodomain-like
PfamPF059206.6E-18338377IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 589 aa     Download sequence    Send to blast
MLYSKDPASS SHSSTPILQG NTIMYMNFPS SSEPYSDAIA NNSQSCMDVP PVTSDSNTSS  60
QEVLLNFRGS QAFENQLNTW KDERNEMLMM HQNLQGQGLS LSLSTHVPLH VPSIPYQNES  120
GDFPLILGNN AMIHGEENRG RNVSFENEDS FANADGAGDV SSYGMPNIAR NIPNSKYLRA  180
AQELLDEVVN VKKAIKEQNG RKDSKEVEGA SKDGVSVSDP SSSTTPKTEV SAAEKQELQN  240
KLTKLLSMLD EVDRRYRQYY HQMQIVVSSF DIQAARRSLG EEDGSSNEKG VGISRLRYVD  300
QQLRQQRALQ QIGMMQQQHA WRPQRGLPES SVSILRAWLF EHFLHPYPKD SEKIMLARQT  360
GLTRSQVSNW FINARVRLWK PMVEEMYKEE TGDADMDSNS SSETNTKPAA KASDKAAEEI  420
HHHGTTSMEQ AMERKSDEMN DMEMMGSDVN SIYQTREGRK QGAESGLFED AVAETSERFM  480
AAGYHVSEFE RFGNIGGVSL TXXXXXXXXX WLCMMAHIML SCHSEKPVYI TLQLLPWAMI  540
MQILNAWIQE TGSTGLFRLC FRHLCDRGFW IRTISYPMRQ EDVAFSPIL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A2e-16327385563Homeobox protein Meis2
3k2a_B2e-16327385563Homeobox protein Meis2
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011088451.10.0BEL1-like homeodomain protein 7
SwissprotQ9SIW19e-94BLH7_ARATH; BEL1-like homeodomain protein 7
TrEMBLA0A4D9C6L40.0A0A4D9C6L4_SALSN; Uncharacterized protein
STRINGXP_006487349.11e-167(Citrus sinensis)
STRINGXP_006423388.11e-167(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA102052226
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]