PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ote100188410032 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
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Family | NAC | ||||||||
Protein Properties | Length: 280aa MW: 31867.1 Da PI: 8.0672 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 173.1 | 8.5e-54 | 19 | 144 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksg 81 lppGfrFhPtdeel+++yL++kv + ++++ +i evd++k+ePwdLp ++k +ekewyfF+ rdkky+tg r+nrat++g Ote100188410032|100188410032 19 LPPGFRFHPTDEELITHYLCNKVLDPSFSA-IAIGEVDMNKIEPWDLPWRAKLGEKEWYFFCVRDKKYPTGVRTNRATAAG 98 79*************************999.88***************888999*************************** PP NAM 82 yWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 yWkatgkd+e+++ +++ vg+kktLvfykgrapkgek++Wv heyrl Ote100188410032|100188410032 99 YWKATGKDREIFR-GKTFVGMKKTLVFYKGRAPKGEKSNWVAHEYRL 144 *************.9999***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 8.24E-60 | 15 | 169 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 56.11 | 19 | 169 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.5E-27 | 20 | 144 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 280 aa Download sequence Send to blast |
MEIKSEEVVV DDGGDHMQLP PGFRFHPTDE ELITHYLCNK VLDPSFSAIA IGEVDMNKIE 60 PWDLPWRAKL GEKEWYFFCV RDKKYPTGVR TNRATAAGYW KATGKDREIF RGKTFVGMKK 120 TLVFYKGRAP KGEKSNWVAH EYRLDGDFYL QKLPKSAKSE WVISRVFQKT SGGKKIHISG 180 MKRMDSGGNS IDISSMPPLI DSTXXXXXXX XXXXXCFSTA PHKNQEDFMS SFINDPIFPT 240 PSNPLSSSVS RSQFPPFQGE SGFNFSDFYS SAGFYSFEEL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-51 | 16 | 175 | 14 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-51 | 16 | 175 | 14 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-51 | 16 | 175 | 14 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-51 | 16 | 175 | 14 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 1e-51 | 16 | 175 | 17 | 174 | NAC domain-containing protein 19 |
3swm_B | 1e-51 | 16 | 175 | 17 | 174 | NAC domain-containing protein 19 |
3swm_C | 1e-51 | 16 | 175 | 17 | 174 | NAC domain-containing protein 19 |
3swm_D | 1e-51 | 16 | 175 | 17 | 174 | NAC domain-containing protein 19 |
3swp_A | 1e-51 | 16 | 175 | 17 | 174 | NAC domain-containing protein 19 |
3swp_B | 1e-51 | 16 | 175 | 17 | 174 | NAC domain-containing protein 19 |
3swp_C | 1e-51 | 16 | 175 | 17 | 174 | NAC domain-containing protein 19 |
3swp_D | 1e-51 | 16 | 175 | 17 | 174 | NAC domain-containing protein 19 |
4dul_A | 1e-51 | 16 | 175 | 14 | 171 | NAC domain-containing protein 19 |
4dul_B | 1e-51 | 16 | 175 | 14 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011087231.1 | 1e-118 | NAC domain-containing protein 100 | ||||
Swissprot | Q9FLJ2 | 1e-102 | NC100_ARATH; NAC domain-containing protein 100 | ||||
TrEMBL | A0A1J6JXC9 | 1e-114 | A0A1J6JXC9_NICAT; Nac domain-containing protein 100 | ||||
TrEMBL | A0A1S3XIL9 | 1e-114 | A0A1S3XIL9_TOBAC; NAC domain-containing protein 100-like isoform X1 | ||||
TrEMBL | A0A1U7YD76 | 1e-114 | A0A1U7YD76_NICSY; NAC domain-containing protein 100 isoform X1 | ||||
STRING | XP_009587074.1 | 1e-115 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA152 | 24 | 279 |
Publications ? help Back to Top | |||
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