PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100188410031

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

NAC

Protein Properties

Length: 288aa MW: 32761.2 Da PI: 8.0778

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100188410031	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	173	9.1e-54	19	144	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksg 81 lppGfrFhPtdeel+++yL++kv + ++++ +i evd++k+ePwdLp ++k +ekewyfF+ rdkky+tg r+nrat++g Ote100188410031\|100188410031 19 LPPGFRFHPTDEELITHYLCNKVLDPSFSA-IAIGEVDMNKIEPWDLPWRAKLGEKEWYFFCVRDKKYPTGVRTNRATAAG 98 79***********************999.88***********888999*********************** PP NAM 82 yWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 yWkatgkd+e+++ +++ vg+kktLvfykgrapkgek++Wv heyrl Ote100188410031\|100188410031 99 YWKATGKDREIFR-GKTFVGMKKTLVFYKGRAPKGEKSNWVAHEYRL 144 *********.9999*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.96E-59	15	177	IPR003441	NAC domain
PROSITE profile	PS51005	54.957	19	177	IPR003441	NAC domain
Pfam	PF02365	1.6E-27	20	144	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 288 aa Download sequence Send to blast
MEIKSEEVVV DDGGDHMQLP PGFRFHPTDE ELITHYLCNK VLDPSFSAIA IGEVDMNKIE 60 PWDLPWRAKL GEKEWYFFCV RDKKYPTGVR TNRATAAGYW KATGKDREIF RGKTFVGMKK 120 TLVFYKGRAP KGEKSNWVAH EYRLDGDFYL QKLPKSAKHI GIFVVQSEWV ISRVFQKTSG 180 GKKIHISGMK RMDSGGNSID ISSMPPLIDS TXXXXXXXXX XXXCFSTAPH KNQEDFMSSF 240 INDPIFPTPS NPLSSSVSRS QFPPFQGESG FNFSDFYSSA GFYSFEEL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-50	16	183	14	171	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-50	16	183	14	171	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-50	16	183	14	171	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-50	16	183	14	171	NO APICAL MERISTEM PROTEIN
4dul_A	1e-50	16	183	14	171	NAC domain-containing protein 19
4dul_B	1e-50	16	183	14	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by the microRNA miR164. {ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:17098808}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011087231.1	1e-114	NAC domain-containing protein 100
Swissprot	Q9FLJ2	2e-99	NC100_ARATH; NAC domain-containing protein 100
TrEMBL	A0A1J6JXC9	1e-111	A0A1J6JXC9_NICAT; Nac domain-containing protein 100
STRING	XP_009587074.1	1e-112	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA152	24	279

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]