PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ote100188030181 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
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Family | LBD | ||||||||
Protein Properties | Length: 82aa MW: 9220.88 Da PI: 8.8855 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 43.2 | 1.1e-13 | 4 | 57 | 1 | 49 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkal 49 +C++C+vlr++C+++C ++p++ p++q++++ +++k++G++ +++l++a Ote100188030181|100188030181 4 SCNGCRVLRKGCSENCSIRPCLewiksPDSQANATVFLAKFYGRAGLMNLVNAX 57 6*************************************************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 9.599 | 3 | 82 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 6.9E-10 | 4 | 57 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 82 aa Download sequence Send to blast |
MRMSCNGCRV LRKGCSENCS IRPCLEWIKS PDSQANATVF LAKFYGRAGL MNLVNAXXXX 60 XXXXPWCAPI AHLIERWLIS IG |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010693111.1 | 6e-33 | PREDICTED: LOB domain-containing protein 41 | ||||
Swissprot | Q9M886 | 6e-32 | LBD41_ARATH; LOB domain-containing protein 41 | ||||
TrEMBL | A0A2U1PPB1 | 4e-32 | A0A2U1PPB1_ARTAN; Lateral organ boundaries domain-containing protein | ||||
STRING | XP_010693111.1 | 2e-32 | (Beta vulgaris) | ||||
STRING | XP_004489144.1 | 6e-32 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21959 | 2 | 2 |