PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100187700071
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family bHLH
Protein Properties Length: 218aa    MW: 24814.5 Da    PI: 7.9863
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100187700071genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH331.1e-101561961055
                                   HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                           HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                   r+RR+riN+++  L+ l+P+      +K++ +++Le+Av+Y+k Lq
  Ote100187700071|100187700071 156 RKRRERINERLRILQNLVPNG-----TKVDISTMLEEAVHYVKFLQ 196
                                   9******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.96E-13143203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.951146195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-12146213IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.2E-11152201IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.76E-11155200No hitNo description
PfamPF000106.1E-8156196IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MEGFEAFLEG EWESLSKLFS CEDSELVLHS NGGADFFESS FDFCYANGND ASLFNSCFYS  60
VSQESSHSST FDHSXXXXXX XXXXXXXXXX XXXXXXXXXX XXXSSRTPRS KKAKKAGRET  120
TIDSNIVQSS SSEEESTAKA KGRKSRATDP QSLYARKRRE RINERLRILQ NLVPNGTKVD  180
ISTMLEEAVH YVKFLQLQIK VNLVSHHSLI RRAKFCYA
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_029144893.13e-34transcription factor bHLH84-like
STRINGXP_010538142.13e-32(Tarenaya hassleriana)