PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ote100187430011 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
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Family | MYB_related | ||||||||
Protein Properties | Length: 146aa MW: 16129.8 Da PI: 7.3877 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 56.2 | 8e-18 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT++Ed++l+++++ +G g+W++ ++ g+ R++k+c++rw +yl Ote100187430011|100187430011 14 KGAWTKDEDQRLINYIRAHGEGNWRSLPKSAGLLRCGKSCRLRWINYL 61 79******************************99************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.5E-24 | 5 | 69 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 22.562 | 9 | 65 | IPR017930 | Myb domain |
SMART | SM00717 | 2.6E-13 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.9E-16 | 14 | 61 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 2.41E-23 | 15 | 87 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.27E-12 | 16 | 61 | No hit | No description |
PROSITE profile | PS50090 | 4.693 | 62 | 113 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 3.2E-6 | 70 | 87 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 146 aa Download sequence Send to blast |
MGRSPCCEKA HTNKGAWTKD EDQRLINYIR AHGEGNWRSL PKSAGLLRCG KSCRLRWINY 60 LRPDLKRGNF TEEEDEIIIK LHSLLGNSGI DPQTXXXXXX XXXSAAAADN FRTAAPPPPS 120 KDADIVPTNE PAEIISFPTA DNSSSA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 1e-17 | 13 | 87 | 26 | 99 | MYB TRANSFORMING PROTEIN |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011096483.1 | 2e-58 | myb-related protein 330 | ||||
Swissprot | P81395 | 3e-57 | MYB30_ANTMA; Myb-related protein 330 | ||||
TrEMBL | A0A059PRE8 | 4e-64 | A0A059PRE8_SALMI; MYB-related transcription factor | ||||
STRING | XP_010104477.1 | 3e-56 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Publications ? help Back to Top | |||
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