PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100187060031
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family M-type_MADS
Protein Properties Length: 198aa    MW: 22761.8 Da    PI: 7.6336
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100187060031genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF60.61.8e-193174750
                                  HHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
                        SRF-TF  7 snrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                                  s+ qvtf+kRr+g++ KA+ELS+LC+ae+a++i s+  +l+ +s
  Ote100187060031|100187060031 31 SRLQVTFAKRRKGLFRKASELSILCGAEIAILIQSPAERLFAFS 74
                                  788**************************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006618.5721777IPR002100Transcription factor, MADS-box
SMARTSM004322.1E-133076IPR002100Transcription factor, MADS-box
PfamPF003191.2E-183173IPR002100Transcription factor, MADS-box
SuperFamilySSF554556.93E-173285IPR002100Transcription factor, MADS-box
CDDcd001201.53E-183476No hitNo description
PRINTSPR004041.3E-93954IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-95475IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
MHEEFQNPRX XXXXXXXXXX XXXXXXXXXX SRLQVTFAKR RKGLFRKASE LSILCGAEIA  60
ILIQSPAERL FAFSHPALID HFTWHSRTIV LRGGDDGRSR YEKAVEILEM EKRMMVEKEV  120
RGFWWEKEIE GLESHELEGF LAGLEDLREN VNGRLQVMEL LRRGGGEFGR SIMAAPIKRF  180
FGGDCASSSS AISNFLTY
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011096574.13e-38agamous-like MADS-box protein AGL23
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13821415