PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100186930101
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family C3H
Protein Properties Length: 457aa    MW: 48834 Da    PI: 8.5806
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100186930101genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH391.3e-121842226
                                  -S---SGGGGTS--TTTTT-SS-SS CS
                       zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
                                  +++ C +++rtG+C yG+rC+F+H+
  Ote100186930101|100186930101 18 DEPDCIYYLRTGFCGYGNRCRFNHP 42
                                  6899********************9 PP
2zf-CCCH40.44.7e-1377101327
                                   S---SGGGGTS--TTTTT-SS-SSS CS
                       zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                                   ++lC++++rtG Ck+G++Ck++H++
  Ote100186930101|100186930101  77 EPLCKYYMRTGMCKFGASCKYHHPK 101
                                   79*********************96 PP
3zf-CCCH32.31.7e-10122147227
                                   -S---SGGGGTS--TTTTT-SS-SSS CS
                       zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                                   + ++C+++ +tG+Ck+G +Ck++H++
  Ote100186930101|100186930101 122 GVKECSYYIKTGHCKFGVTCKYHHPQ 147
                                   6789********************97 PP
4zf-CCCH38.61.8e-12288314127
                                   --S---SGGGGTS--TTTTT-SS-SSS CS
                       zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                                   +++++C++++rtG+Ck+G++Ck++H+p
  Ote100186930101|100186930101 288 PGQPECQYYLRTGECKFGASCKYHHPP 314
                                   5789*********************97 PP
5zf-CCCH35.71.4e-11336360327
                                   S---SGGGGTS--TTTTT-SS-SSS CS
                       zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                                    +lC+++a++G C++G++CkF H++
  Ote100186930101|100186930101 336 APLCSHYAQNGVCRFGPSCKFDHPM 360
                                   68*********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.5771644IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-51643IPR000571Zinc finger, CCCH-type
PfamPF006426.8E-101842IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-62044IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.9E-52242IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.50774102IPR000571Zinc finger, CCCH-type
SMARTSM003562.7E-774101IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-977101IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-677102IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.6E-579100IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.098120148IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.72E-6120148IPR000571Zinc finger, CCCH-type
SMARTSM003560.0013120147IPR000571Zinc finger, CCCH-type
PfamPF006422.5E-7122147IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.483287315IPR000571Zinc finger, CCCH-type
SMARTSM003567.3E-7287314IPR000571Zinc finger, CCCH-type
PfamPF006425.4E-10289314IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-5291314IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.0E-4293314IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.338333361IPR000571Zinc finger, CCCH-type
SMARTSM003565.2E-7333360IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.23E-6335362IPR000571Zinc finger, CCCH-type
PfamPF006427.7E-9336360IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.0E-5338358IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 457 aa     Download sequence    Send to blast
MRQMSLGEGP DSYPERPDEP DCIYYLRTGF CGYGNRCRFN HPLDRSAVKK PNFFNLFGDA  60
MGALRASGGE YPERIGEPLC KYYMRTGMCK FGASCKYHHP KHGAGSSSPI TLNIYGYPMR  120
QGVKECSYYI KTGHCKFGVT CKYHHPQPAG MQMPAPGPLA GPAAVPTPSL YPTVQSPSVQ  180
SSQQYGVLHG NWPVARPTML TGSYVPGSYG PMLLAPGVVP VPGWSPYSAQ VSHGGLQSTQ  240
PTVGAGSVYG ITQLPPSSST YTAPYLSSTS YAGPLSSSQK DHVFPERPGQ PECQYYLRTG  300
ECKFGASCKY HHPPEWSAQK SIVLLSPMGL PMRPGAPLCS HYAQNGVCRF GPSCKFDHPM  360
RALSYSTSSS SLTDMPVAPY PVGSTSATLA PSSSSSDLRP EHQSGFSKDA FSANLSSTHS  420
SSASVGSTFS ASMPTCEFGV HHSGQGTISS TVVSSSN
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011090931.10.0zinc finger CCCH domain-containing protein 32
SwissprotQ84W911e-144C3H32_ARATH; Zinc finger CCCH domain-containing protein 32
TrEMBLA0A4D8Z2S60.0A0A4D8Z2S6_SALSN; Uncharacterized protein
STRINGMigut.G00186.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24122459