PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ote100186430021 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
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Family | NAC | ||||||||
Protein Properties | Length: 113aa MW: 13046.4 Da PI: 4.376 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 53.9 | 6e-17 | 4 | 70 | 55 | 127 |
NAM 55 ekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykg.rapkgektdWvmheyr 127 ++wyf+s+r +nr+t+sgyW++ g +++++s+ +g++vg+kk +fy g a++g kt+W+mhey+ Ote100186430021|100186430021 4 GNKWYFYSRR--------TPNRITESGYWQSIGVEEPIYSSsGGQKVGIKKYSAFYIGdPASQGLKTNWIMHEYK 70 5789999887........579******************9988999**********8857899***********7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 22.711 | 1 | 102 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 1.44E-21 | 3 | 82 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.0E-10 | 7 | 70 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 113 aa Download sequence Send to blast |
MCEGNKWYFY SRRTPNRITE SGYWQSIGVE EPIYSSSGGQ KVGIKKYSAF YIGDPASQGL 60 KTNWIMHEYK DHSKWVLCRV YERDDDDDGG TELSCLDEVF LSLDDLDEIS LPN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 7e-18 | 5 | 84 | 74 | 169 | NAC domain-containing protein 19 |
3swm_B | 7e-18 | 5 | 84 | 74 | 169 | NAC domain-containing protein 19 |
3swm_C | 7e-18 | 5 | 84 | 74 | 169 | NAC domain-containing protein 19 |
3swm_D | 7e-18 | 5 | 84 | 74 | 169 | NAC domain-containing protein 19 |
3swp_A | 7e-18 | 5 | 84 | 74 | 169 | NAC domain-containing protein 19 |
3swp_B | 7e-18 | 5 | 84 | 74 | 169 | NAC domain-containing protein 19 |
3swp_C | 7e-18 | 5 | 84 | 74 | 169 | NAC domain-containing protein 19 |
3swp_D | 7e-18 | 5 | 84 | 74 | 169 | NAC domain-containing protein 19 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269|PubMed:18069942, ECO:0000269|PubMed:20458494}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020553091.1 | 6e-53 | NAC domain-containing protein 104 isoform X2 | ||||
Swissprot | Q8GWK6 | 2e-41 | NC104_ARATH; NAC domain-containing protein 104 | ||||
TrEMBL | A0A2G9FYG1 | 2e-56 | A0A2G9FYG1_9LAMI; Uncharacterized protein | ||||
STRING | XP_009762857.1 | 4e-48 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3766 | 24 | 47 |
Publications ? help Back to Top | |||
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