PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100186290161
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family TALE
Protein Properties Length: 431aa    MW: 48541.5 Da    PI: 6.0512
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100186290161genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox22.71.7e-073704032154
                                   HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
                      Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                                   k +yp++e++++L +++gL+ +q+ +WF N+R +
  Ote100186290161|100186290161 370 KWPYPTEEDKARLVSETGLQLKQINNWFINQRKR 403
                                   469*****************************87 PP
2ELK28.92.6e-10324345122
                           ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                                   ELKh+L+++Y+++++++++E++
  Ote100186290161|100186290161 324 ELKHELKNGYKEKIVDIREEIL 345
                                   9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012551.4E-20159203IPR005540KNOX1
PfamPF037904.9E-18161202IPR005540KNOX1
SMARTSM012563.4E-28212267IPR005541KNOX2
PfamPF037913.4E-20216266IPR005541KNOX2
SMARTSM011887.4E-4324345IPR005539ELK domain
PfamPF037892.3E-6324345IPR005539ELK domain
PROSITE profilePS512139.69324344IPR005539ELK domain
PROSITE profilePS5007111.548344407IPR001356Homeobox domain
SMARTSM003895.5E-11346411IPR001356Homeobox domain
SuperFamilySSF466895.99E-16346411IPR009057Homeodomain-like
CDDcd000862.32E-10347406No hitNo description
Gene3DG3DSA:1.10.10.607.9E-25351409IPR009057Homeodomain-like
PfamPF059202.2E-17364403IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009416Biological Processresponse to light stimulus
GO:0009722Biological Processdetection of cytokinin stimulus
GO:0071345Biological Processcellular response to cytokine stimulus
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 431 aa     Download sequence    Send to blast
MALQHFADNQ LQDNSPVIRN ILXXXXXXXX XXXXXXXXXX XXXXXSWLNS AILRQPPHFS  60
SSVVDTNFLN LHTNSGSSSP ASAAASNXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX  120
XXXXXXXXXX XNNNDTSRSE LPESGGGGGV EGAVNWQNAR FKAEILSHPL YEQLLSAHVA  180
CLRIATPVDQ LPRIDAQLAQ SQQVIDKYSA LGHANHADDK ELDQFMTHYV LLLCSFKDQL  240
QQHVRVHAME AVMACWEIEQ SLQSLTGVSP GEGTGATMSD DDDEQVDSDA NLFDGSLDGP  300
DSMGFGPLIP TESERSLMER VRQELKHELK NGYKEKIVDI REEILRKRRA GKLPGDTTSV  360
LKAWWQSHSK WPYPTEEDKA RLVSETGLQL KQINNWFINQ RKRNWHSNAS SSSTTAMKSK  420
RKSKQGFEDS Q
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022864747.10.0homeobox protein knotted-1-like 3 isoform X1
RefseqXP_022864748.10.0homeobox protein knotted-1-like 3 isoform X2
SwissprotP480001e-176KNAT3_ARATH; Homeobox protein knotted-1-like 3
TrEMBLA0A0V0ID040.0A0A0V0ID04_SOLCH; Putative homeobox protein knotted-1-like 3-like
TrEMBLF6H3V20.0F6H3V2_VITVI; Uncharacterized protein
STRINGXP_004290929.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14322472
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]