PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ote100186010131 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 239aa MW: 27137.9 Da PI: 6.8997 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 85.9 | 2.4e-27 | 10 | 58 | 2 | 50 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 +i+n rqvtfskRr g++KKAeELSvLCda+va++ifsstgkl+ey+ Ote100186010131|100186010131 10 KIDNAAARQVTFSKRRRGLFKKAEELSVLCDADVALLIFSSTGKLFEYA 58 69**********************************************7 PP | |||||||
2 | K-box | 49.4 | 1.9e-17 | 106 | 186 | 19 | 99 |
K-box 19 qelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 ++a+L ke+ + ++++h+ Ge+L+ Ls++eLq+Le+ Le++l+++ +kK e ++++i++l++k k l een +Lr++++ Ote100186010131|100186010131 106 SNHARLSKEVAERSHQLKHMRGEELQGLSIEELQRLEKSLETGLSRVIEKKGEKIMKEISRLREKGKLLLEENARLRHQVM 186 56889999999999****************************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 29.969 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 4.7E-38 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.82E-32 | 2 | 61 | No hit | No description |
SuperFamily | SSF55455 | 2.62E-26 | 3 | 61 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.5E-26 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.9E-25 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.5E-26 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.5E-26 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 13.46 | 101 | 191 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 2.3E-15 | 106 | 185 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 239 aa Download sequence Send to blast |
MAREKIQIRK IDNAAARQVT FSKRRRGLFK KAEELSVLCD ADVALLIFSS TGKLFEYAXP 60 GSXXXXXXXX XXXXXXDEIL ERHKLHAKNL DKLEQPSLEL QLVEDSNHAR LSKEVAERSH 120 QLKHMRGEEL QGLSIEELQR LEKSLETGLS RVIEKKGEKI MKEISRLREK GKLLLEENAR 180 LRHQVMIIAS DNQRNNTVTS ESDNINIYDE GQSSESVNAS NSTGPPQDHD SSDTSLKLG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 9e-19 | 1 | 58 | 1 | 58 | MEF2C |
5f28_B | 9e-19 | 1 | 58 | 1 | 58 | MEF2C |
5f28_C | 9e-19 | 1 | 58 | 1 | 58 | MEF2C |
5f28_D | 9e-19 | 1 | 58 | 1 | 58 | MEF2C |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription repressor that inhibit floral transition in the autonomous flowering pathway, independent of photoperiod and temperature. Acts in a dosage-dependent manner. Together with AGL24 and AP1, controls the identity of the floral meristem and regulates expression of class B, C and E genes. Promotes EFM expression to suppress flowering (PubMed:25132385). {ECO:0000269|PubMed:16679456, ECO:0000269|PubMed:18694458, ECO:0000269|PubMed:19656343, ECO:0000269|PubMed:25132385}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by the floral homeotic genes AP1 and SEP3 in emerging floral meristems. Up-regulated by HUA2. {ECO:0000269|PubMed:15659097, ECO:0000269|PubMed:17428825, ECO:0000269|PubMed:18694458}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011097479.1 | 1e-119 | MADS-box protein JOINTLESS | ||||
Swissprot | Q9FVC1 | 1e-102 | SVP_ARATH; MADS-box protein SVP | ||||
TrEMBL | A0A2G9G7L1 | 1e-121 | A0A2G9G7L1_9LAMI; MADS box transcription factor | ||||
STRING | cassava4.1_015543m | 1e-110 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA938 | 23 | 77 |