PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100185920101
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family bZIP
Protein Properties Length: 329aa    MW: 37341.6 Da    PI: 6.0726
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100185920101genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_1361.5e-116192233
                                  XXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHH CS
                        bZIP_1  2 kelkrerrkqkNReAArrsRqRKkaeieeLee 33
                                  +++k+ rr+++NReAAr+sR+RKka++++Le+
  Ote100185920101|100185920101 61 PDDKVLRRLAQNREAARKSRLRKKAYVQQLEN 92
                                  689***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1706.8E-956109No hitNo description
SMARTSM003381.9E-760123IPR004827Basic-leucine zipper domain
PROSITE profilePS502178.73762104IPR004827Basic-leucine zipper domain
PfamPF001702.6E-86392IPR004827Basic-leucine zipper domain
SuperFamilySSF579594.78E-764103No hitNo description
PROSITE patternPS0003606782IPR004827Basic-leucine zipper domain
PfamPF141443.4E-27148223IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MGLYEPLHQM NMWADFRGNT MLEASPPMML EVNANLDNQS EDTTSHATAA ASRNDQEASK  60
PDDKVLRRLA QNREAARKSR LRKKAYVQQL ENCKLRLIQL EQELDRARQQ QGLCGMDTTQ  120
LAYSGNTNQG VAAFEMEYGQ WVEEQNRQIT EMKNALVSDV GDMELEMFVD RGMRHYFDLF  180
SMKAMAAKAD VFYIMSGMWK TSAERFFLWI GGFRPSELLK ILLPHLDPLS EQQRLDIVNL  240
SQSCQQAEDA LSQGMEKLQF ILAEAIADGL LRQGNYLPQI GAAMDKLEAL TRPIIFDKKR  300
CSRSHASSPF VKRPEASWLS GSTCNALGR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011090575.11e-160transcription factor TGA1
RefseqXP_011090576.11e-160transcription factor TGA1
SwissprotP142321e-127TGA1A_TOBAC; TGACG-sequence-specific DNA-binding protein TGA-1A
TrEMBLA0A4D8YK341e-165A0A4D8YK34_SALSN; Transcription factor TGA
STRINGMigut.H02410.1.p1e-154(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA7802497
Publications ? help Back to Top
  1. Klinedinst S,Pascuzzi P,Redman J,Desai M,Arias J
    A xenobiotic-stress-activated transcription factor and its cognate target genes are preferentially expressed in root tip meristems.
    Plant Mol. Biol., 2000. 42(5): p. 679-88
    [PMID:10809441]
  2. Johnson C,Boden E,Desai M,Pascuzzi P,Arias J
    In vivo target promoter-binding activities of a xenobiotic stress-activated TGA factor.
    Plant J., 2001. 28(2): p. 237-43
    [PMID:11722767]
  3. Katagiri F,Seipel K,Chua NH
    Identification of a novel dimer stabilization region in a plant bZIP transcription activator.
    Mol. Cell. Biol., 1992. 12(11): p. 4809-16
    [PMID:1406663]
  4. Miao ZH,Lam E
    Construction of a trans-dominant inhibitor for members of the TGA family of transcription factors conserved in higher plants.
    Plant J., 1995. 7(6): p. 887-96
    [PMID:7599649]
  5. Pascuzzi P,Hamilton D,Bodily K,Arias J
    Auxin-induced stress potentiates trans-activation by a conserved plant basic/leucine-zipper factor.
    J. Biol. Chem., 1998. 273(41): p. 26631-7
    [PMID:9756903]