PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100185040001
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family S1Fa-like
Protein Properties Length: 241aa    MW: 25584 Da    PI: 5.9097
Description S1Fa-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100185040001genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1S1FA24.17.3e-08181219341
                          S1FA   3 vakveakGlnPGlivllvvgglllvflvgnyilyvyaqk 41 
                                   ++  + kGl PGli+l+ v+  + v l+g  ++y+y +k
  Ote100185040001|100185040001 181 DGDSNRKGLKPGLIILISVADAVGVALIGLVVVYIYWKK 219
                                   667788******************************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF520584.29E-342160IPR032675Leucine-rich repeat domain, L domain-like
Gene3DG3DSA:3.80.10.106.5E-383137IPR032675Leucine-rich repeat domain, L domain-like
PfamPF005600.832143IPR001611Leucine-rich repeat
PRINTSPR000193.5E-52235No hitNo description
PRINTSPR000193.5E-56881No hitNo description
PfamPF046893.5E-5184219IPR006779DNA binding protein S1FA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
IFLYGNNLSG PLPPSLCSLP RLQNLDFSNN SLSGPLPKFL QNCRQLQRLI LAGNQFSGEI  60
PAGIFPELAN LEQLDLSANQ FNGSIPDDMG ELKSLSGTLN LSYNHFTGRI PKSLGDLALT  120
VSFDLRGNDL SGEIPQTGSF ANQGPTAFLD NPSLCGFPLQ KSCKNSSDTT PSVQYGMENN  180
DGDSNRKGLK PGLIILISVA DAVGVALIGL VVVYIYWKKK DSNGCSCTSK GKLGGNGNTG  240
L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4mn8_A6e-24115653760LRR receptor-like serine/threonine-protein kinase FLS2
4mna_A6e-24115653640LRR receptor-like serine/threonine-protein kinase FLS2
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011071213.21e-139LOW QUALITY PROTEIN: receptor protein kinase-like protein ZAR1
TrEMBLA0A2G9GK681e-139A0A2G9GK68_9LAMI; Serine/threonine protein kinase
STRINGMigut.E00027.1.p1e-130(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA779055