PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100184910081
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family WRKY
Protein Properties Length: 406aa    MW: 44796.9 Da    PI: 7.0296
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100184910081genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY99.91.5e-31135191259
                                   --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                          WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                                   +DgynWrKYGqK+vk se+prsYY+Ct+++Cpvkkkvers  d++v ei+Y+geHnh+
  Ote100184910081|100184910081 135 NDGYNWRKYGQKHVKASECPRSYYKCTYQNCPVKKKVERSF-DGRVSEIVYKGEHNHS 191
                                   8****************************************.***************7 PP
2WRKY108.33.7e-34292350159
                                   ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                          WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                                   ldDgy+WrKYGqK+vkg+++prsYYrCt+agC+v+k+vers+ dpk+v++tYeg+Hnhe
  Ote100184910081|100184910081 292 LDDGYKWRKYGQKVVKGNPHPRSYYRCTYAGCNVRKHVERSSADPKAVITTYEGKHNHE 350
                                   59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081123.307129193IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.5E-27130193IPR003657WRKY domain
SuperFamilySSF1182903.4E-25132193IPR003657WRKY domain
SMARTSM007745.6E-35134192IPR003657WRKY domain
PfamPF031063.4E-24135190IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.7E-37278352IPR003657WRKY domain
SuperFamilySSF1182903.4E-30284352IPR003657WRKY domain
PROSITE profilePS5081137.688287352IPR003657WRKY domain
SMARTSM007741.4E-40292351IPR003657WRKY domain
PfamPF031069.6E-27293350IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 406 aa     Download sequence    Send to blast
MSLVVSPPQM QSSESLSPLF MVPPGLSPSG MLNSPGMGFL SPLQSPFGMS HQQALAHVTA  60
QAALSQSYMQ MHAEFQRSYP ANEPPLNHSS PALSETITEP MNPAPTEPES SKIESCEVSQ  120
SDRKTAYIAG DKPANDGYNW RKYGQKHVKA SECPRSYYKC TYQNCPVKKK VERSFDGRVS  180
EIVYKGEHNH SPPQSNKRRK DGSGLDRTTM SVGFEANVVD ESGQESQGTE QELYSGADET  240
GGSVIVLDDE NDDEPVAKRR AMDNGQSMPA SSHQTITESK IVVQTRSEVD LLDDGYKWRK  300
YGQKVVKGNP HPRSYYRCTY AGCNVRKHVE RSSADPKAVI TTYEGKHNHE IPAGRYGSTN  360
HRVSAANALQ SKMQNIAAKE PLPSREMEFG SQVPITLHLK EEQIAA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-38135353878Probable WRKY transcription factor 4
2lex_A4e-38135353878Probable WRKY transcription factor 4
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011098678.10.0probable WRKY transcription factor 4
TrEMBLA0A4D9B6U50.0A0A4D9B6U5_SALSN; WRKY transcription factor 33
STRINGMigut.H00670.1.p1e-175(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA43142344