PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100184580021
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family bHLH
Protein Properties Length: 385aa    MW: 40955.8 Da    PI: 6.7089
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100184580021genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH21.35e-07216242531
                                   HHHHHHHHHHHHHHHHHHHHCTSCCC. CS
                           HLH   5 hnerErrRRdriNsafeeLrellPkas 31 
                                   h+++Er RR+ri +++  L+el+P+a 
  Ote100184580021|100184580021 216 HSIAERLRRERIAERMKSLQELVPNAN 242
                                   99***********************73 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.58E-7209246IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.08E-4209250No hitNo description
PROSITE profilePS5088810.81211266IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.4E-4216242IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.9E-6216243IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 385 aa     Download sequence    Send to blast
MQPVSREFGT MNNINALLNQ HQISSLHEIH SHGQLQQMMA SLDFDPTAPP QDDFLEQMLS  60
SVPQSAASFP WADHYHSPPQ LEEQSAAVLA SKLRQHQISN GAAKALMLQQ QLMPQGDRDD  120
VDDGNGFKSA NSIQANDSSV EALLNGFAGS LGQTSNQPQH FHHPQVQNFG AAATATPSAA  180
AKAINQPAVS GSSGGGAAGQ PRQRVRARRG QATDPHSIAE RLRRERIAER MKSLQELVPN  240
ANKVLSMSRL GGASAVAPSV ADLSSEGRSS NGAPTASTSN NSDRMTVTEH QVAKLMEEDM  300
GSAMQYLQGK GLCLMPISLX XXXXXXXXXX XXXXXXXXDI KINGNPFLNA PASPSMSVLT  360
VQSAAVGGNV NGESSHKEAA SVSKS
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold, UV, ethylene (ACC), flagellin, jasmonic acid (JA), and salicylic acid (SA) treatments. {ECO:0000269|PubMed:12679534}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020551186.11e-136LOW QUALITY PROTEIN: transcription factor bHLH69-like
SwissprotQ9ZUG92e-50BH066_ARATH; Transcription factor bHLH66
TrEMBLA0A0H3Y7K91e-172A0A0H3Y7K9_SALMI; Basic helix-loop-helix transcription factor
STRINGMigut.J01333.1.p1e-121(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37592445
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Zhang J, et al.
    Sperm cells are passive cargo of the pollen tube in plant fertilization.
    Nat Plants, 2017. 3: p. 17079
    [PMID:28585562]