PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ote100184060001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
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Family | ERF | ||||||||
Protein Properties | Length: 129aa MW: 14567.4 Da PI: 4.3154 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60.9 | 2.8e-19 | 1 | 47 | 5 | 55 |
AP2 5 GVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 GVr+++ +g+W+AeIrdp+ + +r++lg+f tae+Aa+a+++a+ +++g Ote100184060001|100184060001 1 GVRQRP-WGKWAAEIRDPR----KaARVWLGTFETAEDAARAYDRAAIEFRG 47 9*****.**********94....36************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 23.683 | 1 | 55 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.05E-21 | 1 | 56 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 3.3E-13 | 1 | 47 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.83E-20 | 1 | 54 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 1.4E-30 | 1 | 55 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 5.8E-35 | 1 | 61 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 129 aa Download sequence Send to blast |
GVRQRPWGKW AAEIRDPRKA ARVWLGTFET AEDAARAYDR AAIEFRGPRA KLNFSFSDYT 60 EGEMSAVEVX XXXXXXXXXX MWEMGSSSNS SNRSDIWDLK IGEDDLQEWM MMMDGDSSDS 120 ANGGNLPSV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 1e-22 | 1 | 56 | 8 | 64 | ATERF1 |
3gcc_A | 1e-22 | 1 | 56 | 8 | 64 | ATERF1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011088263.1 | 7e-46 | ethylene-responsive transcription factor ERF109 | ||||
TrEMBL | A0A2G9GYP8 | 4e-48 | A0A2G9GYP8_9LAMI; Uncharacterized protein | ||||
STRING | Solyc01g108240.2.1 | 5e-42 | (Solanum lycopersicum) | ||||
STRING | XP_009803667.1 | 4e-42 | (Nicotiana sylvestris) | ||||
STRING | PGSC0003DMT400066343 | 5e-42 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 |