PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100183750231
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family MYB
Protein Properties Length: 283aa    MW: 32490.8 Da    PI: 6.8471
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100183750231genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.11.6e-165398147
                                  TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
               Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                                  rg W + Ed +l+++v+++G+ +W++Ia+++  gR++k+c++rw++ 
  Ote100183750231|100183750231 53 RGHWRPAEDSKLKELVALYGPQNWNLIAEKLE-GRSGKSCRLRWFNQ 98
                                  899*****************************.***********996 PP
2Myb_DNA-binding574.5e-18105148146
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                   r ++T+eE+e+l  a++++G++ W+ Iar ++ gRt++ +k++w+ 
  Ote100183750231|100183750231 105 RRAFTEEEEERLMAAHRLYGNK-WAMIARLFP-GRTDNAVKNHWHV 148
                                   678*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.174899IPR017930Myb domain
SMARTSM007172.9E-1452101IPR001005SANT/Myb domain
PfamPF002494.9E-165398IPR001005SANT/Myb domain
SuperFamilySSF466894.87E-2853146IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.0E-2654106IPR009057Homeodomain-like
CDDcd001673.03E-125697No hitNo description
PROSITE profilePS5129427.288100154IPR017930Myb domain
SMARTSM007172.1E-14104152IPR001005SANT/Myb domain
PfamPF002491.5E-14105147IPR001005SANT/Myb domain
CDDcd001671.27E-10107147No hitNo description
Gene3DG3DSA:1.10.10.604.7E-21107153IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010199Biological Processorgan boundary specification between lateral organs and the meristem
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MVYAEEWCFE GNNSEGSGEN NELIDLNSSA NQEDEDYSNP HASRSAQSKL CARGHWRPAE  60
DSKLKELVAL YGPQNWNLIA EKLEGRSGKS CRLRWFNQLD PRINRRAFTE EEEERLMAAH  120
RLYGNKWAMI ARLFPGRTDN AVKNHWHVIM ARKYREQSTA YRRRKMGQFV FKRMQEDSNR  180
GGGGGAMIHG DGFWTPQPSL AFYPGPSYSN EMVSILNHNK SWEETSYSSS YPYHHHYNTN  240
TSMQQHQHSA YHFPSELAGN SEPKSEEEVA TPFIDFLGVG SAS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-33511545108B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00222DAPTransfer from AT1G69560Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011075638.11e-124myb-like protein Q
TrEMBLA0A059PSU61e-141A0A059PSU6_SALMI; MYB-related transcription factor
STRINGMigut.E00083.1.p1e-102(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA16842470