PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ote100183600051 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
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Family | MYB_related | ||||||||
Protein Properties | Length: 384aa MW: 42104.4 Da PI: 6.3898 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 43.8 | 5.9e-14 | 37 | 75 | 7 | 47 |
HHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 7 eEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 eEd ++++a++ +G++ W++Ia+ + gRt++ +k++w++ Ote100183600051|100183600051 37 EEDHIILEAHAVYGNK-WASIAKLLH-GRTDNAIKNHWNST 75 9***************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 5.8E-7 | 33 | 78 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.53E-9 | 37 | 76 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.7E-17 | 37 | 77 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.09E-12 | 37 | 80 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.6E-12 | 37 | 75 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 17.25 | 37 | 80 | IPR017930 | Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 384 aa Download sequence Send to blast |
MNGISLSEIG QENGMLCVVM ELFFYGPEDF VSNEGYEEDH IILEAHAVYG NKWASIAKLL 60 HGRTDNAIKN HWNSTLRRKC VNRTRSTSAA GHMLSDTCTD WAKASKGGTS TGPPLNSFKL 120 LEKEKMMMMM SYQLKSSTDT IQTTAKCQTL EPNQHIVASA GSVKPLKSSE TEDLRMMVEG 180 QPKKYDCNTF TSASSNLLKP SSGSAEAHHH SVKGTVSRPV AKVGAFNVYN PYSHNKTISG 240 TFPLRGSLNS EPCKFLDGEH TIPPQCGHGC CTAFTEDASH LSLLGPEFVE YEELPPLSSP 300 EFMSVWTDVN SIAWIRSGLE NAGKASGGDD SLMLHARNSV LRNVEQNMRN DEFGNLFTGM 360 TREVGSTQMT MPAFNLRAEV EGLS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-16 | 27 | 79 | 55 | 107 | B-MYB |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011076754.1 | 3e-95 | transcription factor MYB25 | ||||
TrEMBL | A0A059PSL5 | 1e-122 | A0A059PSL5_SALMI; MYB-related transcription factor |