PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ote100182980051 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
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Family | NAC | ||||||||
Protein Properties | Length: 173aa MW: 20000.4 Da PI: 5.5409 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 110.5 | 1.8e-34 | 8 | 128 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksg 81 lppGfrFhPtdeel+ ++L+++ ++ + i+++++y ++PwdL+ k+ + k+wyf+s+r +nr+t+sg Ote100182980051|100182980051 8 LPPGFRFHPTDEELLLHFLHRNSTALLPFHPDLIPDLHLYPYDPWDLQGKAMCQGKKWYFYSRR--------TPNRITHSG 80 79******************9988877555589**************977777899******97........579****** PP NAM 82 yWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 yW++ g +++++s+ +g++vg kk +fy g+ ++g ktdW+mhey++ Ote100182980051|100182980051 81 YWQSIGVEEPIYSSrGGQKVGFKKYSAFYIGQPSQGLKTDWIMHEYKV 128 ************9978899***************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.62E-41 | 5 | 133 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 40.518 | 8 | 162 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.9E-21 | 9 | 128 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 173 aa Download sequence Send to blast |
MGDNNLNLPP GFRFHPTDEE LLLHFLHRNS TALLPFHPDL IPDLHLYPYD PWDLQGKAMC 60 QGKKWYFYSR RTPNRITHSG YWQSIGVEEP IYSSRGGQKV GFKKYSAFYI GQPSQGLKTD 120 WIMHEYKVPI SSSSSGKRDF KLRDNEEDDG TELSCLDEVF LSLDDLDEVS LPN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 3e-35 | 4 | 136 | 16 | 153 | NAC domain-containing protein 19 |
3swm_B | 3e-35 | 4 | 136 | 16 | 153 | NAC domain-containing protein 19 |
3swm_C | 3e-35 | 4 | 136 | 16 | 153 | NAC domain-containing protein 19 |
3swm_D | 3e-35 | 4 | 136 | 16 | 153 | NAC domain-containing protein 19 |
3swp_A | 3e-35 | 4 | 136 | 16 | 153 | NAC domain-containing protein 19 |
3swp_B | 3e-35 | 4 | 136 | 16 | 153 | NAC domain-containing protein 19 |
3swp_C | 3e-35 | 4 | 136 | 16 | 153 | NAC domain-containing protein 19 |
3swp_D | 3e-35 | 4 | 136 | 16 | 153 | NAC domain-containing protein 19 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269|PubMed:18069942, ECO:0000269|PubMed:20458494}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011092697.1 | 3e-80 | NAC domain-containing protein 104 isoform X1 | ||||
Refseq | XP_020553092.1 | 3e-80 | NAC domain-containing protein 104 isoform X1 | ||||
Refseq | XP_020553093.1 | 3e-80 | NAC domain-containing protein 104 isoform X1 | ||||
Swissprot | Q8GWK6 | 7e-64 | NC104_ARATH; NAC domain-containing protein 104 | ||||
TrEMBL | A0A4D9BY50 | 3e-80 | A0A4D9BY50_SALSN; Uncharacterized protein | ||||
STRING | XP_009762857.1 | 3e-77 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3766 | 24 | 47 |
Publications ? help Back to Top | |||
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