PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100181900001
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family GRAS
Protein Properties Length: 430aa    MW: 48212.4 Da    PI: 5.3047
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100181900001genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS58.81.1e-18144223385
                          GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl 83 
                                   + L+ecA a+++g++++a++++  l++++s +gdp +R+aay++eAL +r+++s+++lykal+++e++   ss++l+a+++
  Ote100181900001|100181900001 144 RFLFECAAAIHDGNFKEASSMVDVLRQHVSIQGDPSERIAAYMVEALVSRMVNSGNGLYKALRCKEAP---SSDRLSAMQA 221
                                   579****************************************************************9...8999999998 PP

                          GRAS  84 fs 85 
                                   f 
  Ote100181900001|100181900001 222 FR 223
                                   85 PP
2GRAS197.21e-60219395103278
                          GRAS 103 leavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvl 181
                                   ++a+  e++vHi+Dfd++qG Q+ +Ll+aL++  ++ p++R+Tgv++pes+      l+ +g+rL+++A+ l+++fef++ 
  Ote100181900001|100181900001 219 MQAFRDEKAVHIVDFDVNQGSQYYTLLKALSDTGGKRPHIRLTGVDDPESVqrPVGGLKIIGKRLEELAKDLNLSFEFRA- 298
                                   5899*********************************************99888899***********************. PP

                          GRAS 182 vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerfleale 262
                                   v  +++ ++++ L++++gEal+Vn+++qlh+l+desvs+ + rd++L+++k+l+Pk+v+vveq++++n+++Fl+rf ea +
  Ote100181900001|100181900001 299 VPAETALISPSLLECRTGEALVVNFAFQLHHLPDESVSTVNVRDQLLRMIKGLKPKLVTVVEQDVNTNTSPFLQRFGEAYN 379
                                   7999***************************************************************************** PP

                          GRAS 263 yysalfdsleaklpre 278
                                   yysa+f+sl+a ++r 
  Ote100181900001|100181900001 380 YYSAVFESLDAMMARX 395
                                   **********999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098533.725116430IPR005202Transcription factor GRAS
PfamPF035143.6E-58219395IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 430 aa     Download sequence    Send to blast
MSLVGCAALF RLYSLKDDSD SSGLSTSGLY SDKHVITYPS SCDSYDPKYF LDSPSTSDVL  60
WNPLNYASQL DSPSITDYDE DRLRLKLQEF EQALLVDDNT NNAMEVDGEW LQHSPKESSS  120
SDSNLSSINS HKEMLILSPV YRKRFLFECA AAIHDGNFKE ASSMVDVLRQ HVSIQGDPSE  180
RIAAYMVEAL VSRMVNSGNG LYKALRCKEA PSSDRLSAMQ AFRDEKAVHI VDFDVNQGSQ  240
YYTLLKALSD TGGKRPHIRL TGVDDPESVQ RPVGGLKIIG KRLEELAKDL NLSFEFRAVP  300
AETALISPSL LECRTGEALV VNFAFQLHHL PDESVSTVNV RDQLLRMIKG LKPKLVTVVE  360
QDVNTNTSPF LQRFGEAYNY YSAVFESLDA MMARXXXXXX XXXXXXXXXX XXXXXXXXLF  420
GSRHNQRGRV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A6e-3314839025279Protein SCARECROW
5b3h_A6e-3314839024278Protein SCARECROW
5b3h_D6e-3314839024278Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022894259.11e-167scarecrow-like protein 1
SwissprotQ9SDQ31e-130SCL1_ARATH; Scarecrow-like protein 1
TrEMBLA0A4D9C2W40.0A0A4D9C2W4_SALSN; Uncharacterized protein
STRINGXP_009766061.11e-148(Nicotiana sylvestris)
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]