PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ote100180270061 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
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Family | MYB_related | ||||||||
Protein Properties | Length: 267aa MW: 29963.9 Da PI: 7.3456 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 48.9 | 1.5e-15 | 7 | 50 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+++ +E++ +++++++lG++ W++Ia+++ +Rt++++k++w++ Ote100180270061|100180270061 7 RGKFSLQEEQTIIQLHALLGNR-WSAIASHLS-KRTDNEIKNYWNT 50 89********************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 7.2E-23 | 2 | 57 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 23.922 | 2 | 56 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.53E-14 | 2 | 62 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.7E-15 | 6 | 54 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.2E-14 | 7 | 50 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.09E-11 | 9 | 52 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 267 aa Download sequence Send to blast |
MRPDIKRGKF SLQEEQTIIQ LHALLGNRWS AIASHLSKRT DNEIKNYWNT RLKKRLVKMG 60 IDPTTHKPKN HGLGCSQPKD IANLSHMAQW ESARLEAEAR IVRESKLISA SQITTAHPPP 120 LGRLPCLDIL KVWQGTWRTT GKDLNAPAFF AANINLESPT SILNFSNNII HENTIATDYV 180 GNPIPCMDGG NAHDEEEKDK MGNIMQLQVH DHITDPNTST YASDSLRFPS FLDGFMADSG 240 LFEDSKMNNY WSNILNVVNS PMGSPVF |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011075641.1 | 5e-88 | myb-related protein 306-like | ||||
TrEMBL | A0A059PRS5 | 1e-114 | A0A059PRS5_SALMI; MYB-related transcription factor | ||||
STRING | EOY01854 | 1e-75 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |