PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100179940031
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family MYB_related
Protein Properties Length: 176aa    MW: 19821.5 Da    PI: 10.7007
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100179940031genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding569.3e-18116161147
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                   rg+W++ Ed +l ++v ++G+++W+tIa+ ++ gR++k+c++rw + 
  Ote100179940031|100179940031 116 RGPWSAAEDVILTELVSKFGPRNWSTIAAGIP-GRSGKSCRLRWCNQ 161
                                   89******************************.***********985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129423.546111166IPR017930Myb domain
SuperFamilySSF466892.76E-17114172IPR009057Homeodomain-like
SMARTSM007171.2E-14115164IPR001005SANT/Myb domain
PfamPF002491.0E-16116161IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-21117172IPR009057Homeodomain-like
CDDcd001671.75E-14118160No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 176 aa     Download sequence    Send to blast
MMNLLLYPQP CTHRITAPSV PNRDILTGGH ECHYVKTIGQ NGPDENRGKS DSVFVLSPFL  60
RDHFNSVTRL SQRRIPAHKX XXXXXXXXXX XXXXXXXXXX XXXXAENSGG AEVKVRGPWS  120
AAEDVILTEL VSKFGPRNWS TIAAGIPGRS GKSCRLRWCN QLNPYLKRKP FTGKIK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A2e-14115172360MYB PROTO-ONCOGENE PROTEIN
1h88_C5e-1411517257114MYB PROTO-ONCOGENE PROTEIN
1h89_C5e-1411517257114MYB PROTO-ONCOGENE PROTEIN
1mse_C2e-14115172360C-Myb DNA-Binding Domain
1msf_C2e-14115172360C-Myb DNA-Binding Domain
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1683345